View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1376_low_25 (Length: 521)
Name: NF1376_low_25
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 143; Significance: 7e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 279 - 494
Target Start/End: Complemental strand, 43200429 - 43200209
Alignment:
| Q |
279 |
gttgggagacctaaagtgatgattgtagtaaccttatccttagactaatttgtgaaggaattccacaattttttatgc----tacgctgttttaccctaa |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
43200429 |
gttgggagacctaaagtgatgattgtagtaaccttatccttagactaatttgtgaaggaattccactattttttatgcattgtatgctgttttaccctaa |
43200330 |
T |
|
| Q |
375 |
nnnnnnnataaaataaacccttctatcgacattttagtgaacaaacgacatgata-tttgtaatatgtatgtaaagaattcttatatgctttatttggtt |
473 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
43200329 |
ttttcttatgaaataaacccttctatccgcattttagtgaacaaacgacatgacattttgtaatatgtatgcaaagaattcttatatgctatatttggtt |
43200230 |
T |
|
| Q |
474 |
atccaacacatgcatattctg |
494 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43200229 |
atccaacacatgcatattctg |
43200209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 43200709 - 43200490
Alignment:
| Q |
13 |
aatataatcactagagaacacaggtttttagatgcataatcagaatgtgccnnnnnnntgcgcataatcagaagtatcttcaaaattaaaagatgctcaa |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43200709 |
aatataatcactatagaacacaggtttttagatgcataatcagaatgtgccaaaaaaatgcgcataatcagaagtatcttcaaaattaaaagatgctcaa |
43200610 |
T |
|
| Q |
113 |
cctcgttcttcaaagtaaatgaaaac--------------ggcagtttggtgtgcatgtaggggtctggaatagggttggcctaatatatgagatttaaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
43200609 |
cctcgttcttcaaagtaaatgaaaacggcaatttaaaaaaggcagtttggtgtgcatgtaggggtctggaataggattggcctaatatacgagatttaaa |
43200510 |
T |
|
| Q |
199 |
acaaattttaatatatgaga |
218 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
43200509 |
ataaattttaatatatgaga |
43200490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University