View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_27 (Length: 512)
Name: NF1376_low_27
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 37019948 - 37019511
Alignment:
| Q |
1 |
attgcacactacaaggtcatgggactttcttggactggagaaagatggaggaatttctcttgattctggttggtggaaggcaagatttggtgaagataca |
100 |
Q |
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| T |
37019948 |
attgcacactacaaggtcatgggactttcttggactggaaaaagatggaggaatttctcttgattctggttggtggaaggcaagatttggtgaagataca |
37019849 |
T |
|
| Q |
101 |
atcatggctaatttagattcaggttagtttttatagatgnnnnnnnnnnttaagtaaatatttcctattacattacatatctagatgtaaaatagaagaa |
200 |
Q |
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| T |
37019848 |
atcatggctaatttagattcaggttagtttttatagatgaaaaaaaaaattaagtaaatatttcctattatattacatatctagatgtaaaatagaagaa |
37019749 |
T |
|
| Q |
201 |
cttggtgagtaaaataatttcacgtgtgcatcgaattcaatgatatgttgcacatcatgagttaaaaacacattatttatcatactctatggttccacat |
300 |
Q |
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| T |
37019748 |
cttggtgagtaaaataatttcacgtgtgcatcgaattcaatgatatgttgcacatcatgagttaaaaacacattatttatcatactctatggttccacat |
37019649 |
T |
|
| Q |
301 |
tccaaaattaattataaacgtgtaaaattgattttgacatgtttgttgttgaaacaggcgtttggccggaacatgaaagtttcagtggcattggatatgg |
400 |
Q |
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| T |
37019648 |
tccaaaattaattataaacgtgtaaaattgattttgacatgtttgttattgaaacaggcgtttggccggaacatgaaagtttcagtggcattggatatgg |
37019549 |
T |
|
| Q |
401 |
tcctgtgccatcaaagtggcatggaaatggggtctgtg |
438 |
Q |
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| T |
37019548 |
tccagtgccatcaaagtggcatggaaatggggtctgtg |
37019511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 31303124 - 31303166
Alignment:
| Q |
303 |
caaaattaattataaacgtgtaaaattgattttgacatgtttg |
345 |
Q |
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| T |
31303124 |
caaaattaattataaatgtgtaaaactgattttgacatgtttg |
31303166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 4080431 - 4080391
Alignment:
| Q |
306 |
aattaattataaacgtgtaaaattgattttgacatgtttgt |
346 |
Q |
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|||| ||| |||| ||||||||||||||||||||||||||| |
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| T |
4080431 |
aattgattctaaaggtgtaaaattgattttgacatgtttgt |
4080391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 10055233 - 10055189
Alignment:
| Q |
302 |
ccaaaattaattataaacgtgtaaaattgattttgacatgtttgt |
346 |
Q |
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| T |
10055233 |
ccaaaattgattataaacgtgtagaatcgattttgacatttttgt |
10055189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 30472857 - 30472897
Alignment:
| Q |
304 |
aaaattaattataaacgtgtaaaattgattttgacatgttt |
344 |
Q |
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|||||| ||| ||||| |||||||||||||||||||||||| |
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| T |
30472857 |
aaaattgattctaaacatgtaaaattgattttgacatgttt |
30472897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 1232844 - 1232804
Alignment:
| Q |
302 |
ccaaaattaattataaacgtgtaaaattgattttgacatgt |
342 |
Q |
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|||||| | ||||||||||||||||||||||||||| |||| |
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| T |
1232844 |
ccaaaagtgattataaacgtgtaaaattgattttgaaatgt |
1232804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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