View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_28 (Length: 503)
Name: NF1376_low_28
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 39142353 - 39142815
Alignment:
| Q |
1 |
gcaacattttatgttttgtcaagaaaacagctgtcatggtgtttatgttttatgttttttcatttgttggaataaatgttctttatttgtagtttgaaat |
100 |
Q |
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| T |
39142353 |
gcaacattttatgttttgtcaagaaaacagctgtcatggtgtttatgttttatgttttttcatttgttggaataaatgttctttatttgtagtttgaaat |
39142452 |
T |
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| Q |
101 |
catcatggtgatgnnnnnnnatttgttggaataaatgtatatgtatattactgcagtgatggattctgttttagtgattaggtggttaaacatctatttt |
200 |
Q |
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| T |
39142453 |
catcatggtgatgtttttttatttgttggaataaatgtatatgtatattactgcagtgatggattctgttttagtgattaggtggttaaacatctatttt |
39142552 |
T |
|
| Q |
201 |
cttggtgattatcatttgaatttgtttttgaaagttttgttat---gtagtatgatttgatgattgacctagaaatttaataaagggagcttcnnnnnnn |
297 |
Q |
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| T |
39142553 |
cttggtgattatcatttgaatttgtttttgaaagtttagttatgtagtagtatcatttgatgattgacctagaaatttaataaaggaagcttctttttgt |
39142652 |
T |
|
| Q |
298 |
nnnnnnnnnnnnnnnnnnccacagggttctatggggtgtgaatgctagtgttgaagaatagaatggattttaagggttctgataactcagagttttgtgg |
397 |
Q |
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| T |
39142653 |
ttttgtttggttttttttccacagggttctatggggtgtgaatgctagtgttgaagaatagaatggattttaagggttctgataactcagagttttgtgg |
39142752 |
T |
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| Q |
398 |
tgttggtgagaaaagtatatggcatccagtttcttatgacgacgcagattatgatgatgatgt |
460 |
Q |
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| T |
39142753 |
tgttggtgagaaaagtatatggcatccagtttcttatgacgacgcagattatgatgatgatgt |
39142815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 460
Target Start/End: Original strand, 39142838 - 39142884
Alignment:
| Q |
414 |
atatggcatccagtttcttatgacgacgcagattatgatgatgatgt |
460 |
Q |
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| T |
39142838 |
atatggcatccagtttcttatgacgacgcagattatgatgatgatgt |
39142884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 405
Target Start/End: Complemental strand, 39496079 - 39496033
Alignment:
| Q |
359 |
aatggattttaagggttctgataactcagagttttgtggtgttggtg |
405 |
Q |
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| T |
39496079 |
aatggcttttaagggttctgataagtcaaagttctgtggtgttggtg |
39496033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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