View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_29 (Length: 503)

Name: NF1376_low_29
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_29
NF1376_low_29
[»] chr4 (9 HSPs)
chr4 (237-416)||(5197450-5197629)
chr4 (238-413)||(5184054-5184229)
chr4 (237-416)||(4840640-4840813)
chr4 (237-416)||(5174709-5174882)
chr4 (237-416)||(5215595-5215774)
chr4 (237-416)||(4855142-4855319)
chr4 (237-416)||(5161770-5161949)
chr4 (98-186)||(5174932-5175020)
chr4 (98-177)||(5184282-5184361)
[»] chr1 (1 HSPs)
chr1 (33-207)||(23083987-23084160)
[»] chr2 (3 HSPs)
chr2 (33-207)||(36248934-36249107)
chr2 (33-207)||(19626634-19626807)
chr2 (33-207)||(19823535-19823708)
[»] chr6 (1 HSPs)
chr6 (33-188)||(16550033-16550187)
[»] chr7 (1 HSPs)
chr7 (100-207)||(4826657-4826762)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 7e-78; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 237 - 416
Target Start/End: Complemental strand, 5197629 - 5197450
Alignment:
Q  237 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 336  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||||    
T  5197629 ttacaatatgcaaatatttgagactccacataatgtttcaacaggaactatggccactcttcaatacaatggaaaagttggaaagaatctacgcataaac 5197530  T
Q  337 ttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaacactgttatgaaggccaatagtattgttat 416  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5197529 ttactgatgtaataaaaccaggccatgcgccaacgtggattgatgcacaacactgttatgaaggccaatagtattgttat 5197450  T

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Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 238 - 413
Target Start/End: Complemental strand, 5184229 - 5184054
Alignment:
Q  238 tacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaact 337  Q
    |||| ||||||||||||| |||||||| |||||||||||||||| |||||||||| || |||||| |||||||||| |||||| ||||||||||||||||    
T  5184229 tacagtatccaaatattttagactccacataaagtttcaacaggaactatggacactcatcaatataatggaaaagatggaaagaatctacgcataaact 5184130  T
Q  338 tactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaacactgttatgaaggccaatagtattgt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  5184129 tactgatgtaataaaaccaggccatacgccaacgtggattgatgcccaacacagttatgaaggccaatagtattgt 5184054  T

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Target: chr4; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 237 - 416
Target Start/End: Original strand, 4840640 - 4840813
Alignment:
Q  237 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 336  Q
    ||||||||||||||||||| |||||||| ||||||||| |||      |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  4840640 ttacaatatccaaatattttagactccacataaagtttaaac------tatggacactctttaatacaatggaaaagttggaaaaaatctacgcataaac 4840733  T
Q  337 ttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaacactgttatgaaggccaatagtattgttat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||    
T  4840734 ttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaacactgttatgaaggctaacaatattgttat 4840813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 237 - 416
Target Start/End: Complemental strand, 5174882 - 5174709
Alignment:
Q  237 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 336  Q
    |||||||||||||||||||||||||||| ||||||||| |||      |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5174882 ttacaatatccaaatatttgagactccacataaagtttaaac------tatggacactcttcaatacaatggaaaagttggaaaaaatctacgcataaac 5174789  T
Q  337 ttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaacactgttatgaaggccaatagtattgttat 416  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||    
T  5174788 ttactgatataataaaaccaggccatacgccaacgtggattgatgcacaaaactgttatgagggccaacaatattgttat 5174709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 237 - 416
Target Start/End: Complemental strand, 5215774 - 5215595
Alignment:
Q  237 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 336  Q
    ||||||||||||||||||||||||| ||  | ||||||||||||| |  |  |||| |||||||||||||||||| |||||||||| | |||||||||||    
T  5215774 ttacaatatccaaatatttgagacttcacttgaagtttcaacaggaataacagacactcttcaatacaatggaaacgttggaaaaattttacgcataaac 5215675  T
Q  337 ttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaacactgttatgaaggccaatagtattgttat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5215674 ttactgatgtaataaaaccaggccatacgccaacgtggattgacgcacaacactgttatgaaggccaatagtattgttat 5215595  T

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Target: chr4; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 237 - 416
Target Start/End: Original strand, 4855142 - 4855319
Alignment:
Q  237 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 336  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||  |||  | ||||    
T  4855142 ttacaatacccaaatatttgagactccacataaagtttcaacaggtactacggacactctttaatacaatggaaaagttggaaaaaagatacctacaaac 4855241  T
Q  337 ttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaacactgttatgaaggccaatagtattgttat 416  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| || ||||||||||||    
T  4855242 ttactaatgtaataaaaccaggccaaacgccaacgtggattgatg--caacactgttatgaaggtcagtagtattgttat 4855319  T

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Target: chr4; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 237 - 416
Target Start/End: Complemental strand, 5161949 - 5161770
Alignment:
Q  237 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 336  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||| | ||| |||||| |||||||||||||||||||||||    ||   ||||    
T  5161949 ttacaatatccaaatatttgagactccacgtaaagtttcaacaggtactacgtacactcttcagtacaatggaaaagttggaaaaaaaaatcgtgcaaac 5161850  T
Q  337 ttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaacactgttatgaaggccaatagtattgttat 416  Q
    ||||| |||||||||||||| |||||||||||||| | |||||| ||||||||||||| ||||||||| | |||||||||    
T  5161849 ttactaatgtaataaaaccaagccatacgccaacgagcattgatacacaacactgttacgaaggccaacaatattgttat 5161770  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 5175020 - 5174932
Alignment:
Q  98 aatatataacaatagcttcaaaccacttcagataaggaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacat 186  Q
    |||||||||||||  || ||||||||| |||||||  | || |||||||||||| | ||| ||||||||||||||||||| ||||||||    
T  5175020 aatatataacaatgcctccaaaccactccagataaatacatcacacaaacaacacgatgatcataaagttgacaaaaggaactgaacat 5174932  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 5184361 - 5184282
Alignment:
Q  98 aatatataacaatagcttcaaaccacttcagataaggaaattacacaaacaacaggctgaacataaagttgacaaaagga 177  Q
    ||||||| |||||| |||||||   || |||||||| | || |||||||||||| | |||||||||||||||||| ||||    
T  5184361 aatatatcacaatatcttcaaagttctccagataagtacatcacacaaacaacatgatgaacataaagttgacaagagga 5184282  T

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Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 23083987 - 23084160
Alignment:
Q  33 ttgttgtgtttggtttgctatagcaatannnnnnncaattctggttcaacaagctaaacaataccaa--tatataacaatagcttcaaaccacttcagat 130  Q
    ||||||||||||||||||||||| | ||       ||||||| |||||| |||||||||||||| ||  ||||||||||||||| ||||||||| |||||    
T  23083987 ttgttgtgtttggtttgctatagtactattattt-caattctagttcaaaaagctaaacaatacaaaaatatataacaatagctgcaaaccactccagat 23084085  T
Q  131 aaggaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcagatgtctcaacattaaact 207  Q
    ||| | || | | |||||||||| || ||||||||  |||||||  | |||||||||| || ||||||||| |||||    
T  23084086 aagtatatgaaaaaaacaacaggatgcacataaag--gacaaaattaactgaacatcaaatatctcaacatcaaact 23084160  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 36249107 - 36248934
Alignment:
Q  33 ttgttgtgtttggtttgctatagcaatannnnnnncaattctggttcaacaagctaaacaatacca--atatataacaatagcttcaaaccacttcagat 130  Q
    ||||||||||||||||||||||| | ||       ||||||| |||||| |||||||||||||  |  ||||||||||||||||||||||||||  ||||    
T  36249107 ttgttgtgtttggtttgctatagtagtattgttt-caattctagttcaaaaagctaaacaatataataatatataacaatagcttcaaaccactctagat 36249009  T
Q  131 aaggaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcagatgtctcaacattaaact 207  Q
    ||| | || ||| |||||||||| || ||||||  | ||||||| || ||||||||||  | ||||||||| |||||    
T  36249008 aagaatatgacaaaaacaacaggatgcacataa--tggacaaaatgatctgaacatcaattatctcaacatcaaact 36248934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 19626807 - 19626634
Alignment:
Q  33 ttgttgtgtttggtttgctatagcaatannnnnnncaattctggttcaacaagctaaacaatacca--atatataacaatagcttcaaaccacttcagat 130  Q
    ||||||||||||||||||||||| | ||       ||||||| |||||| |||||||||||||  |  ||||||||||||||||||||||||||  ||||    
T  19626807 ttgttgtgtttggtttgctatagtagtattgttt-caattctagttcaaaaagctaaacaatataataatatataacaatagcttcaaaccactctagat 19626709  T
Q  131 aaggaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcagatgtctcaacattaaact 207  Q
    ||| | || ||| || ||||||| || ||||||  | |||||||  | ||||||||||  | ||||||||| |||||    
T  19626708 aagaatatgacaaaaccaacaggatgcacataa--tggacaaaataaactgaacatcaattatctcaacatcaaact 19626634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 19823708 - 19823535
Alignment:
Q  33 ttgttgtgtttggtttgctatagcaatannnnnnncaattctggttcaacaagctaaacaatacca--atatataacaatagcttcaaaccacttcagat 130  Q
    ||||||||||||||||||||||| | ||       ||||||| |||||| |||||||||||||  |  ||||||||||||||||||||||||||  ||||    
T  19823708 ttgttgtgtttggtttgctatagtagtattgttt-caattctagttcaaaaagctaaacaatataataatatataacaatagcttcaaaccactctagat 19823610  T
Q  131 aaggaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcagatgtctcaacattaaact 207  Q
    ||| | || ||| || ||||||| || ||||||  | |||||||  | ||||||||||  | ||||||||| |||||    
T  19823609 aagaatatgacaaaaccaacaggatgcacataa--tggacaaaataaactgaacatcaattatctcaacatcaaact 19823535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 16550033 - 16550187
Alignment:
Q  33 ttgttgtgtttggtttgctatagcaatannnnnnncaattctggttcaacaagctaaacaatacca--atatataacaatagcttcaaaccacttcagat 130  Q
    ||||||||||||||||||||||| | ||       ||||||| |||||| ||| |||||||||  |  |||||||||||||||||||||||||| || ||    
T  16550033 ttgttgtgtttggtttgctatagtagtattgttt-caattctagttcaaaaagataaacaatataataatatataacaatagcttcaaaccactccaaat 16550131  T
Q  131 aaggaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatca 188  Q
    ||| | || ||| |||||||||| || ||||||  | ||||||| || ||||||||||    
T  16550132 aagaatatgacaaaaacaacaggatgcacataa--tggacaaaatgatctgaacatca 16550187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 4826762 - 4826657
Alignment:
Q  100 tatataacaatagcttcaaaccacttcagataaggaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcagatgtctcaac 199  Q
    ||||||||||||||||||||||||| |||||||  | || ||| |||||||||| || ||||||  | ||||||| || ||||||||||  | |||||||    
T  4826762 tatataacaatagcttcaaaccactccagataaaaatatgacaaaaacaacaggatgcacataa--tggacaaaatgaactgaacatcaattatctcaac 4826665  T
Q  200 attaaact 207  Q
    || |||||    
T  4826664 atcaaact 4826657  T

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