View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_31 (Length: 496)
Name: NF1376_low_31
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 121 - 481
Target Start/End: Complemental strand, 35655766 - 35655406
Alignment:
| Q |
121 |
gtttttgtaagttttataatacgggtctttgacacgannnnnnngttgaaacaattacaagtttcagagacattatactcacctaatatcggtgatctag |
220 |
Q |
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| T |
35655766 |
gtttttgtaagttttataatacgggtctttgacacgatttttttgttgaaacaattacaagtttcagagaaattatactcacctaatatcggtgatctag |
35655667 |
T |
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| Q |
221 |
taggtcatatttgatatctgtcctttttactatggtatgtagacagtcctttatatgtttaactaatatattatgtctgataacattgacagtgagttaa |
320 |
Q |
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| T |
35655666 |
taggtcatatttgatatctgtcctttttactatggtatatagacagtcctttatatgtttaactaatatattatgtctgataccattgacagtgagttaa |
35655567 |
T |
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| Q |
321 |
gggagcaagaaccaattattgttagccgttaagatgtcgaagcattagtaaaattgaagataacttgtaacagaaatgaggatcatgatatcccttgtat |
420 |
Q |
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| T |
35655566 |
gggagcaagaaccaattattgttagccgttaagatgtcgaagcattagtaaaattgaagataacttgtaacagaaatgagggtcatgatatcccttttat |
35655467 |
T |
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| Q |
421 |
tttttattaaaccttcatatttgctgaactactctatttgtgattcagtatccttttgaag |
481 |
Q |
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| T |
35655466 |
tttttattaaaccttcatatttgctgaactactctatttgtgattcagtatccttttgaag |
35655406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 39142473 - 39142589
Alignment:
| Q |
18 |
atttgttggaataaatgtatatgtatattactgcagtgatggattctgttttagtgattaggtggttaaacatctattttcttggtgattatcatttgaa |
117 |
Q |
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| T |
39142473 |
atttgttggaataaatgtatatgtatattactgcagtgatggattctgttttagtgattaggtggttaaacatctattttcttggtgattatcatttgaa |
39142572 |
T |
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| Q |
118 |
tttgtttttgtaagttt |
134 |
Q |
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| T |
39142573 |
tttgtttttgaaagttt |
39142589 |
T |
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