View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_36 (Length: 469)
Name: NF1376_low_36
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 30 - 452
Target Start/End: Original strand, 35289999 - 35290417
Alignment:
| Q |
30 |
gtgacttgtgagcaagacttgcctctatggttatgctaactagaatgattatgttaatatctttttaattaatgatttaattgtttgtttttggtttcca |
129 |
Q |
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| T |
35289999 |
gtgacttgtgagcaagacttgcctctatggttatgctaactagaatgattatgttaatatctttttaatttatgatttaattgtttgtttttggtttcca |
35290098 |
T |
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| Q |
130 |
ggacgaccacctatggaagaaatattagaagctcgaagaaagaaggtattcatattcaactgcataaaagtatcatgttagcatataatgtttctgcaga |
229 |
Q |
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| T |
35290099 |
ggacgaccacctatggaagaaatattagaagctcgaagaaagaaggtattcatattcaactgcataaa-gtatcatgttagtatataatgtttctgcaga |
35290197 |
T |
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| Q |
230 |
ataaaatcaggaaaatgaagatggcaatgaaaatttaacacaaaaaagaatttcagtcggagaaccatctgaatttttaaagagaatgattgtttaacct |
329 |
Q |
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| T |
35290198 |
ataaaatcaggaaaatgaagatggcaatgaaaatttaacacaaa---gaatttcagtcggagaaccatctgaatttttaaagagaatgattgtttaacct |
35290294 |
T |
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| Q |
330 |
catatacattagaataattgagattgaaattatgccccattgcttagattagtctatccctgttaatttaggtatagttgaccttatgttgcaaaaatga |
429 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35290295 |
catatacagtagaataattgagattgaaattatgccccattgcttagattagtctatccctgttaatttaggtatagttgaccttatattgcaaaaatga |
35290394 |
T |
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| Q |
430 |
aggactcgttattttgaccatgc |
452 |
Q |
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| T |
35290395 |
aagactcgttattttgaccatgc |
35290417 |
T |
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