View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_40 (Length: 449)
Name: NF1376_low_40
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 30 - 438
Target Start/End: Complemental strand, 33315973 - 33315567
Alignment:
| Q |
30 |
ggaaggccaaagaaacaaagaaggaaagatgcatccgagggtccttccggttcaggtaatgttcggaggtcatatccagtgataacatgttcaaggtgtg |
129 |
Q |
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| T |
33315973 |
ggaaggccaaagaaacaaacaaggaaagatgcatttgagggtccttccggttcaagtaatgttcagaggtcatatccagtgctaacatgttcaaggtgtg |
33315874 |
T |
|
| Q |
130 |
gtctagaaggtaaccacaataggttcggctgcactaatcaaggtgtgatgtctatgcctcccaattggattcaaccaccaccaccacctcccaacaatga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | ||| |||||||| |||||||||||||||| |
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| T |
33315873 |
gtctagaaggtaaccacaataggttcggctgcactaatcaagctgtgatgcctatgcctcccaattaggttccaccaccac---cacctcccaacaatga |
33315777 |
T |
|
| Q |
230 |
gggtcaaggagaacaagttactttagatttgtcacaatctgccccacaaacacaa-agcaattatttgatgtgaacgtgcaaggaccacaaccaatagga |
328 |
Q |
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| T |
33315776 |
gggtcaaggagaacaagttcctttagatttgtcacaatcttccccgcaaacacaagagcaattatttgatgtgaatgtgcaaggaccacaaccaatagga |
33315677 |
T |
|
| Q |
329 |
attggacaaggaacttttgatccagcaccggttggagttaggccaccacctattaggggtcaaaatccaaatgcacgtctgaatgaacaacaaatgttta |
428 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||| ||| |
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| T |
33315676 |
attggacaaggaacttttgatccagcacctattggagttaggccaccacctattagggttcaaaatctaaatgcacgtctgaatggataacaaatgctta |
33315577 |
T |
|
| Q |
429 |
catctttcat |
438 |
Q |
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| T |
33315576 |
catctttcat |
33315567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 31 - 438
Target Start/End: Original strand, 38983971 - 38984372
Alignment:
| Q |
31 |
gaaggccaaagaaacaaagaaggaaagatgcatccgagggtccttccggttcaggtaatgttcggaggtcatatccagtgataacatgttcaaggtgtgg |
130 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||| | |||||| |||||||| |||||||||||||||||| |
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| T |
38983971 |
gaaggccaaagaaacaaagaaggaaatatgcatatgagggtccttcctgttcaagtaatgtctgaaggtcacatccagtgcaaacatgttcaaggtgtgg |
38984070 |
T |
|
| Q |
131 |
tctagaaggtaaccacaataggttcggctgcactaatcaaggtgtgatgtctatgcctcccaattggattcaaccaccaccaccacctcccaacaatgag |
230 |
Q |
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| T |
38984071 |
tctagaaggtagccacaataggtttcgctgcactaatcaaggtgtgatgtctatgcctccccattgg------cctccaccaccacgtctcaacaatgcg |
38984164 |
T |
|
| Q |
231 |
ggtcaaggagaacaagttactttagatttgtcacaatctgccccacaaacacaa-agcaattatttgatgtgaacgtgcaaggaccacaaccaataggaa |
329 |
Q |
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| T |
38984165 |
agtcaaggaaatgaagttgctttagatttgtcacaatttgccccacaaacacaagagcaattatttgatgtgaatgtgcaaggaccacaaccaataggaa |
38984264 |
T |
|
| Q |
330 |
ttggacaaggaacttttgatccagcaccggttggagttaggccaccacctattaggggtcaaaatccaaatgcacgtctgaatgaacaacaaatgtttac |
429 |
Q |
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|| |||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
38984265 |
ttagacagtgaacttttgatccagcaccgattggagttaggccaccacctatta-gggtcaaactccaaatgcacgtctgaatgaacaacaaatgcttac |
38984363 |
T |
|
| Q |
430 |
atctttcat |
438 |
Q |
| |
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||||||||| |
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| T |
38984364 |
atctttcat |
38984372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 32794055 - 32794113
Alignment:
| Q |
380 |
attaggggtcaaaatccaaatgcacgtctgaatgaacaacaaatgtttacatctttcat |
438 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||| || |||||||||||||| |
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| T |
32794055 |
attaggggtcaaactccaaatgcacgtatgaatgaacaacagatatttacatctttcat |
32794113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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