View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_41 (Length: 445)
Name: NF1376_low_41
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_41 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Original strand, 42634342 - 42634776
Alignment:
| Q |
11 |
cacagagataaatggcaatgtggtagttaatggaatggaaaacaaatatttttcgaagaagttgagttttctattgtattgttaannnnnnnnnnnnnnn |
110 |
Q |
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|||| ||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
42634342 |
cacaaagacaaatggcaatgtgttagttaatggaatggaaaacatatattttttgaagaagttgagttttctattgtattgttaattttttatttttttt |
42634441 |
T |
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| Q |
111 |
aaatgaaaccaatttcattaaaaaggatggagtttcttcgatccaaacaaggtccgaattggataaaagagcaaatttttctaagtaatgtgcagcatag |
210 |
Q |
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| T |
42634442 |
aaatgaaaccaatttcattaaaaaggatggagtttcttcgatccaaacaaggtccgaattggataaaagagcaaattttgctaagtaatgtgcagcatag |
42634541 |
T |
|
| Q |
211 |
ttagccacgcgtctaacatgagcaaaactaatagaattaaagctaagactaagtttgatgcactcatttacaattttttctaaatatgtcgatacatcgt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42634542 |
ttagccacgcgtctaacatgagcaaaactaatagaattaaagctaagactaagtttgatgcactcatttacaattgtttctaaatatgtcgatacatcgt |
42634641 |
T |
|
| Q |
311 |
ctccaattgccgtaatcacattccttgaatctgattaagttgtccttaatattgtggtaaccatctacaaaactccaacaacatcttccataactaatat |
410 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42634642 |
ctccaattgccgtaatcacattccatgaatctgattaagttctccttaatattgtggtaaccatctacaaaactccaacaacatcttccataactaatat |
42634741 |
T |
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| Q |
411 |
aaaatgctaaaatccccattatacaacatgctctt |
445 |
Q |
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| T |
42634742 |
aaaatgctaaaatccccattatacaacatgctctt |
42634776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 150 - 344
Target Start/End: Original strand, 25518169 - 25518369
Alignment:
| Q |
150 |
gatccaaacaaggtccgaattggataaaagagcaaatttttctaagtaatgtgcagcatagttagccacgcgtctaacatgagcaaaactaatagaatta |
249 |
Q |
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||||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||| | ||||||||| || |||||||||||||| ||||| |||||| |
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| T |
25518169 |
gatccaaacaaagtccgaattggatgaaagagcaaattttgctaagtaatgcgcagcttggttagccacacgcctaacatgagcaaagctaattgaatta |
25518268 |
T |
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| Q |
250 |
aagctaagactaagtttgatgcactcatttacaattttttctaaatatgtcgataca------tcgtctccaattgccgtaatcacattccttgaatctg |
343 |
Q |
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| T |
25518269 |
aagctaggacttagtttgatgcactcatttacaattgttcctaaataggttgatacatgaaactcgtcttcaattgccgtaatcacattccttgaatctg |
25518368 |
T |
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| Q |
344 |
a |
344 |
Q |
| |
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| |
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| T |
25518369 |
a |
25518369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 136 - 346
Target Start/End: Complemental strand, 37433273 - 37433058
Alignment:
| Q |
136 |
gatggagtttcttcgatccaaacaaggtccgaattggataaaagagcaaatttttctaagtaatgtgcagcatagttagccacgcgtctaacatgagcaa |
235 |
Q |
| |
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||||| |||||||||||||| |||| ||| |||||||| |||||||||||||| |||||||||| || | | ||||||||| || |||||| |||||| |
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| T |
37433273 |
gatggggtttcttcgatccatacaaagtctgaattggaagaaagagcaaattttgctaagtaatgcacaacttggttagccacacgcctaacacgagcaa |
37433174 |
T |
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| Q |
236 |
aactaatagaattaaagctaagactaagtttgatgcactcatttacaattttttctaaatatgtcgataca------tcgtctccaattgccgtaatcac |
329 |
Q |
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| T |
37433173 |
agctaatatagttaaagttaggactta-attgatgcattcatttacaattgttcctaaataggtcaatacatgaaactcgtcttcaatcaccgtaatcac |
37433075 |
T |
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| Q |
330 |
attccttgaatctgatt |
346 |
Q |
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| T |
37433074 |
attccttgaatctgatt |
37433058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 31617054 - 31617004
Alignment:
| Q |
257 |
gactaagtttgatgcactcatttacaattttttctaaatatgtcgatacat |
307 |
Q |
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|||| |||||||| ||||||||||||||| |||||||||| ||| |||||| |
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| T |
31617054 |
gacttagtttgatacactcatttacaattgtttctaaataggtcaatacat |
31617004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 31617120 - 31617071
Alignment:
| Q |
151 |
atccaaacaaggtccgaattggataaaagagcaaatttttctaagtaatg |
200 |
Q |
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| T |
31617120 |
atccaaactaggtccgaattggatgaaagataaaattttgctaagtaatg |
31617071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 136 - 346
Target Start/End: Original strand, 7184768 - 7184976
Alignment:
| Q |
136 |
gatggagtttcttcgatccaaacaaggtccgaattggataaaagagcaaatttttctaagtaatgtgcagcatagttagccacgcgtctaacatgagcaa |
235 |
Q |
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|||||||||||||||||||||||| || | |||| | | |||||| ||||||| ||| |||||| ||| | | ||||||||| || ||||||||||||| |
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| T |
7184768 |
gatggagtttcttcgatccaaacagagttcaaattaggtgaaagagaaaattttgctaggtaatgcgcaacttggttagccacacgcctaacatgagcaa |
7184867 |
T |
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| Q |
236 |
aactaatagaattaaagctaagactaagtttgatgcactcatttacaattttttctaaatatgtcgatacatcgtctccaattgccgtaatcacattcct |
335 |
Q |
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| T |
7184868 |
aactaatagagttaaagctaggacttggtttgatgccctcatttacaattgttcctaaatacat-ga-agcttgtcttcaattgcagtaatcacattcct |
7184965 |
T |
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| Q |
336 |
tgaatctgatt |
346 |
Q |
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||||| ||||| |
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| T |
7184966 |
tgaatttgatt |
7184976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 30941892 - 30941983
Alignment:
| Q |
192 |
taagtaatgtgcagcatagttagccacgcgtctaacatgagcaaaactaatagaattaaagctaagactaagtttgatgcactcatttacaa |
283 |
Q |
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||||||||||||||| | |||||| || ||||||| ||||||||| |||||||||||||||||| | | |||||||| ||||| ||||||| |
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| T |
30941892 |
taagtaatgtgcagcttggttagctacacgtctaatatgagcaaagctaatagaattaaagctagaatttagtttgatacactcgtttacaa |
30941983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 251
Target Start/End: Complemental strand, 20589313 - 20589198
Alignment:
| Q |
136 |
gatggagtttcttcgatccaaacaaggtccgaattggataaaagagcaaatttttctaagtaatgtgcagcatagttagccacgcgtctaacatgagcaa |
235 |
Q |
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||||||||| |||||||||||| || || ||||||||| ||||||||||| || |||| ||||| |||| | ||||||||| | |||||||||| || |
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| T |
20589313 |
gatggagttacttcgatccaaaaaaagtttgaattggatgaaagagcaaatattgctaaataatgctcagcttggttagccacacacctaacatgagtaa |
20589214 |
T |
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| Q |
236 |
aactaatagaattaaa |
251 |
Q |
| |
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| T |
20589213 |
agctaataaaattaaa |
20589198 |
T |
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