View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_43 (Length: 440)
Name: NF1376_low_43
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 21 - 411
Target Start/End: Original strand, 26355158 - 26355548
Alignment:
| Q |
21 |
acacatatcaaagggattaattgtataattgcaagaagtataaacaaaatattttttatagtaactatttagtatggttaccaaaatatacttagtgctg |
120 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26355158 |
acacatattaaagggattaattgtataattgcaagaattataaacaaaatattttttatagtaactatttagtatggttaccaaaatatacttagtgctg |
26355257 |
T |
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| Q |
121 |
ggggatttcagtttttggttatatattctagttaatgcatgctgattataactagtgttggattgttctatataggtagtggttttgcaaatggaatcat |
220 |
Q |
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| T |
26355258 |
ggggatttcagtttttggttaaatattctagttaatgcatgctgattataactagtgttggattgttctatataggtagtggttttgcaaatggaatcat |
26355357 |
T |
|
| Q |
221 |
tgatctaggtggacttcaagtgtcacaagtatcaacatttaacaaagtttgggccacctatgatggtggaccagataatcaaggtgccacaatatttgaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26355358 |
tgatctaggtggacttcaagtgtcacaagtatcaacatttaacaaagtttgggccacctatgatggtggaccagataatcaaggtgccacaatatttgaa |
26355457 |
T |
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| Q |
321 |
ccaacaggtatacctcaaggattctctatgttgggtagctacagccaacctaacaacaaacctctttttggatatgttcttgtggcaaagg |
411 |
Q |
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| T |
26355458 |
ccaacaggtatacctcaaggattctctatgttgggttgctacagccaacctaacaacaaacctctttttggatatgttcttgtggcaaagg |
26355548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 317 - 411
Target Start/End: Complemental strand, 26348974 - 26348880
Alignment:
| Q |
317 |
tgaaccaacaggtatacctcaaggattctctatgttgggtagctacagccaacctaacaacaaacctctttttggatatgttcttgtggcaaagg |
411 |
Q |
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| T |
26348974 |
tgaaccaacaggaatacctaaaggattctctatgttaggtagctacagccaaccaaacaataagcctctttttggatatgtttttgtagcaaagg |
26348880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 411
Target Start/End: Complemental strand, 26333713 - 26333647
Alignment:
| Q |
345 |
tctatgttgggtagctacagccaacctaacaacaaacctctttttggatatgttcttgtggcaaagg |
411 |
Q |
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| T |
26333713 |
tctatgttaggcagctacagccaacccaacaacaaacctctttttggatatgttcttgcagcaaagg |
26333647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 411
Target Start/End: Complemental strand, 26339130 - 26338965
Alignment:
| Q |
246 |
caagtatcaacatttaacaaagtttgggccacctatgatggtggaccagataatcaaggtgccacaatatttgaaccaacaggtatacctcaaggattct |
345 |
Q |
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|||| ||||||||| | ||||||||||| |||||| || |||||||| || |||||||| ||| || | | |||||||||||| | | |||| || |
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| T |
26339130 |
caagcatcaacattcagcaaagtttggggcacctacgaaggtggaccggacaatcaaggcgcctcagtgtatgaaccaacaggattgaggtatggatact |
26339031 |
T |
|
| Q |
346 |
ctatgttgggtagctacagccaacctaacaacaaacctctttttggatatgttcttgtggcaaagg |
411 |
Q |
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||||||| || || ||||||||||| |||| ||| ||||||||||| ||||||||||| ||||||| |
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| T |
26339030 |
ctatgttaggcagttacagccaacccaacagcaagcctctttttggttatgttcttgtagcaaagg |
26338965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 28316377 - 28316296
Alignment:
| Q |
191 |
tataggtagtggttttgcaaatggaatcattgatctaggtggacttcaagtgtcacaagtatcaacatttaacaaagtttgg |
272 |
Q |
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|
||||||| |||| |||| |||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||| ||||| |
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| T |
28316377 |
tataggtggtggatttggtaatggaatcattgatctaggtgaactaaaagtgtcacaaatatcaacattcaacaaaatttgg |
28316296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 26325914 - 26325767
Alignment:
| Q |
239 |
agtgtcacaagtatcaacatttaacaaagtttgggccacctatgatggtggaccagataatcaaggtgccacaatatttgaaccaacaggtatacctcaa |
338 |
Q |
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|||||||||| | |||||||| |||||||||||| | ||| |||| |||||||||||| ||| || | ||||| ||||||||||||||| || || || |
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| T |
26325914 |
agtgtcacaaatttcaacattcaacaaagtttggacaaccaatgaaggtggaccagatgatcttggagttacaatttttgaaccaacaggtttatctgaa |
26325815 |
T |
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| Q |
339 |
ggattctctatgttgggtagctacagccaacctaacaacaaacctctt |
386 |
Q |
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|| |||| | | || || ||| ||||||| ||||||||||||||| |
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| T |
26325814 |
ggcttctttgttttaggatactattgccaaccaaacaacaaacctctt |
26325767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 222 - 409
Target Start/End: Original strand, 54948416 - 54948603
Alignment:
| Q |
222 |
gatctaggtggacttcaagtgtcacaagtatcaacatttaacaaagtttgggccacctatgatggtggaccagataatcaaggtgccacaatatttgaac |
321 |
Q |
| |
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||||||||||| || |||||||| || |||||| ||||||||| |||||| | || |||||||||||| ||| || |||| ||| || | || |||| |
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| T |
54948416 |
gatctaggtgggctgcaagtgtctgcagcatcaacgtttaacaaaatttggggcgccattgatggtggaccggatgataaaggagcctcagtgttcgaac |
54948515 |
T |
|
| Q |
322 |
caacaggtatacctcaaggattctctatgttgggtagctacagccaacctaacaacaaacctctttttggatatgttcttgtggcaaa |
409 |
Q |
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||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |
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| T |
54948516 |
caacaggaatacctcaaggattctctatgttaggcagctacagccaacccaacaacaaacctctttttgggtatgttcttgtagcaaa |
54948603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 807002 - 807067
Alignment:
| Q |
157 |
gcatgctgattataactagtgttggattgttctatataggtagtggttttgcaaatggaatcattg |
222 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||| |
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| T |
807002 |
gcatgctgattataactagtgttggattgttacatataggtagtggttttgcaaattgaattattg |
807067 |
T |
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