View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_45 (Length: 429)

Name: NF1376_low_45
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_45
NF1376_low_45
[»] chr7 (3 HSPs)
chr7 (260-399)||(26000194-26000333)
chr7 (85-214)||(39070815-39070944)
chr7 (85-214)||(43505108-43505237)
[»] chr3 (1 HSPs)
chr3 (16-195)||(348676-348839)
[»] chr1 (1 HSPs)
chr1 (240-355)||(51168085-51168204)
[»] scaffold0047 (1 HSPs)
scaffold0047 (16-119)||(25124-25227)
[»] scaffold0005 (1 HSPs)
scaffold0005 (16-119)||(11293-11396)
[»] chr4 (2 HSPs)
chr4 (16-119)||(14828313-14828416)
chr4 (241-273)||(2500882-2500914)
[»] chr5 (1 HSPs)
chr5 (85-219)||(30087599-30087732)
[»] chr8 (1 HSPs)
chr8 (60-122)||(42125492-42125553)
[»] chr6 (2 HSPs)
chr6 (241-277)||(26616080-26616116)
chr6 (241-277)||(26722008-26722044)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 260 - 399
Target Start/End: Original strand, 26000194 - 26000333
Alignment:
Q  260 cttaactatgaccattcactctctcattctgtaagttatagtctgtattgattgctattctccaattgatcatctttgtgagtataaatatgtgatcacc 359  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  26000194 cttaactatgaccattcactctctaattgtgtaagttatagtttgtattgattgctattctccaattgatcatctttgtgagtataaatttgtgattacc 26000293  T
Q  360 tttcaactgacatcaaatgaacctgttgagttggagcatt 399  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26000294 tttcaactgacatcaaatgaacctgttgagttggagcatt 26000333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 39070944 - 39070815
Alignment:
Q  85 taaattttttcatgttaggaagcaaaacaatgattgctcatattcagaaagtgaggaagatctgaaggggtacttaagaggtgagttttgtctatccctt 184  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  39070944 taaatttcttcgtgttaggaagcaaaacaatgattgctcatattcataaagtgaggaagatttgaaggggtgcttaagaagtgagttttgtctatccctt 39070845  T
Q  185 aaaatatctctgttcaaaatagatgataca 214  Q
     |||||||||| |||||| |||| ||||||    
T  39070844 caaatatctctcttcaaagtagaggataca 39070815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 43505237 - 43505108
Alignment:
Q  85 taaattttttcatgttaggaagcaaaacaatgattgctcatattcagaaagtgaggaagatctgaaggggtacttaagaggtgagttttgtctatccctt 184  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||||| ||||| |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  43505237 taaatttcttcgtgttaggaagcaaaacaacgattgctcatattcataaagtaaggaagatttgaaggggtgcttaagaggtgagttttgtctatccctt 43505138  T
Q  185 aaaatatctctgttcaaaatagatgataca 214  Q
    ||||||||||| |||||| |||| ||||||    
T  43505137 aaaatatctctcttcaaagtagaggataca 43505108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 348676 - 348839
Alignment:
Q  16 ataagtggtacattttctacatttttcaccaccatatttatttgttctttgtagtgaacttacgtaaactaaattttttcatgttaggaagcaaaacaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||         || |       ||||| ||||||||||||    
T  348676 ataagtggtacattttctacatttttcaccaccatatttatttggtctttgtagtaaactta---------aagt-------gttagaaagcaaaacaat 348759  T
Q  116 gattgctcatattcagaaagtgaggaagatctgaaggggtacttaagaggtgagttttgtctatcccttaaaatatctct 195  Q
    | ||||||||||||| |||||||||||||| ||||||  |||  ||| || |||||||||||||||||||||||||||||    
T  348760 ggttgctcatattcataaagtgaggaagatttgaaggactacaaaaggggcgagttttgtctatcccttaaaatatctct 348839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 240 - 355
Target Start/End: Complemental strand, 51168204 - 51168085
Alignment:
Q  240 ctattccataactcatatttcttaactatgaccattcactctctcattctgtaagttatagtctgtattg----attgctattctccaattgatcatctt 335  Q
    |||||||||||||||||||| ||||| ||||  |||||||| |||||| ||||||||||||| |||||||    |||| ||| |||||||| ||||||||    
T  51168204 ctattccataactcatattttttaacaatgataattcactcgctcattgtgtaagttatagtttgtattgattaattgatatcctccaattcatcatctt 51168105  T
Q  336 tgtgagtataaatatgtgat 355  Q
    ||||||||||||||||||||    
T  51168104 tgtgagtataaatatgtgat 51168085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 25227 - 25124
Alignment:
Q  16 ataagtggtacattttctacatttttcaccaccatatttatttgttctttgtagtgaacttacgtaaactaaattttttcatgttaggaagcaaaacaat 115  Q
    ||||||| | |||||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||  ||||||| ||| |||||||||| ||||||||    
T  25227 ataagtgctgcattttctacattttttaccaccatatttatttgatctttgtagtaaacttatgtaacttaaatttcttcgtgttaggaagtaaaacaat 25128  T
Q  116 gatt 119  Q
    ||||    
T  25127 gatt 25124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 11293 - 11396
Alignment:
Q  16 ataagtggtacattttctacatttttcaccaccatatttatttgttctttgtagtgaacttacgtaaactaaattttttcatgttaggaagcaaaacaat 115  Q
    ||||||| | |||||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||  ||||||| ||| |||||||||| ||||||||    
T  11293 ataagtgctgcattttctacattttttaccaccatatttatttgatctttgtagtaaacttatgtaacttaaatttcttcgtgttaggaagtaaaacaat 11392  T
Q  116 gatt 119  Q
    ||||    
T  11393 gatt 11396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 14828416 - 14828313
Alignment:
Q  16 ataagtggtacattttctacatttttcaccaccatatttatttgttctttgtagtgaacttacgtaaactaaattttttcatgttaggaagcaaaacaat 115  Q
    ||||||| | |||||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||  ||||||| ||| |||||||||| ||||||||    
T  14828416 ataagtgctgcattttctacattttttaccaccatatttatttgatctttgtagtaaacttatgtaacttaaatttcttcgtgttaggaagtaaaacaat 14828317  T
Q  116 gatt 119  Q
    ||||    
T  14828316 gatt 14828313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 2500914 - 2500882
Alignment:
Q  241 tattccataactcatatttcttaactatgacca 273  Q
    ||||||||||||||| |||||||||||||||||    
T  2500914 tattccataactcatgtttcttaactatgacca 2500882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 30087732 - 30087599
Alignment:
Q  85 taaattttttcatgttaggaagcaaaacaatgattgctcatattcagaaagtgaggaagatctgaaggggtacttaagaggtgagttttgtctatccctt 184  Q
    ||||||| || ||||||||||||||||| |||||| ||||| |||| ||||| || ||| | ||| ||   | ||||||| || ||||||||||||||||    
T  30087732 taaatttgttaatgttaggaagcaaaaccatgatttctcatgttcaaaaagtaagaaagttttga-ggaaaatttaagagttgggttttgtctatccctt 30087634  T
Q  185 aaaatatctctgttcaaaatagatgatacatattt 219  Q
    |||||| |||| |||| | |||| ||||| |||||    
T  30087633 aaaataactctcttcacactagaggatacctattt 30087599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 42125492 - 42125553
Alignment:
Q  60 ttctttgtagtgaacttacgtaaactaaattttttcatgttaggaagcaaaacaatgattgct 122  Q
    ||||||||||| ||||||| |||  ||||||| ||||||||| ||||||||||||||||||||    
T  42125492 ttctttgtagtaaacttacataatttaaatttcttcatgtta-gaagcaaaacaatgattgct 42125553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 26616116 - 26616080
Alignment:
Q  241 tattccataactcatatttcttaactatgaccattca 277  Q
    |||||||||||| ||||||||||||||||||||||||    
T  26616116 tattccataactgatatttcttaactatgaccattca 26616080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 26722044 - 26722008
Alignment:
Q  241 tattccataactcatatttcttaactatgaccattca 277  Q
    |||||||||||| ||||||||||||||||||||||||    
T  26722044 tattccataactgatatttcttaactatgaccattca 26722008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University