View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_46 (Length: 429)
Name: NF1376_low_46
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 402
Target Start/End: Original strand, 34327593 - 34327986
Alignment:
| Q |
11 |
cacagaagcttaatctcacaaatcctcattattgtcaatcgaatctcaggatctccttctagtttattagtcgcacaaaccctcaccacaatgaaaaccc |
110 |
Q |
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| T |
34327593 |
cacagaagcttaatctcacaaaccctcattattgtcaatcgaatctcaggatctccttccagtttattagtcgcacaaaccctcaccacaatgaaaaccc |
34327692 |
T |
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| Q |
111 |
atcaacagattccccaacaacacccattgggtcaatattttaatgggatgaaattaatgcaactgagtttttcggccgactgcagaaactccagcgcaga |
210 |
Q |
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| T |
34327693 |
atcaac-gattccccaacaacacccattgggtcaatattttaatgggatgaaattaatgcaactaaattttccggctggctgcagaaactccggcgcagc |
34327791 |
T |
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| Q |
211 |
tacagagaattccggtgtggtggtcgccggcaaagatactccaaccaagcaataaatttaggggttttgttaaggttgttatggagac-aaaatggctgg |
309 |
Q |
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| T |
34327792 |
tacagagaattccggtgtggtggtcgccggcaaagatactccaaccaagcaataagtttatgggttttgttgaggttgttatggagacaaaaatggctgg |
34327891 |
T |
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| Q |
310 |
tttagtttctcaaaaagaggatcatagtgacnnnnnnnttaagagagaagt---tgactggtgattttcaaatctgatcaatctataaaataaatg |
402 |
Q |
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| T |
34327892 |
tttagtttctcaaaaagaggatcatagtgac-aaaaaattaagagagaagttgatgattggtgtttttcaaatctgatcaatctataaaataaatg |
34327986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 40724131 - 40724280
Alignment:
| Q |
19 |
cttaatctcacaaatcctcattattgtcaatcgaatctcaggatctccttctagtttattagtcgcacaaaccctcaccacaatgaaaacccatcaacag |
118 |
Q |
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| T |
40724131 |
cttaatctcataaaccctcattattgtcaatcgaatctcaggatctccttccagtttatttgtcgcacaaaccctcaccacaatgaaaacccatcaac-g |
40724229 |
T |
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| Q |
119 |
attccccaacaacacccattgggtcaatattttaatgggatgaaattaatg |
169 |
Q |
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| T |
40724230 |
attccctaacaacacccattgggtcaatattttaatgggatgaaattaatg |
40724280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 402
Target Start/End: Original strand, 40724287 - 40724380
Alignment:
| Q |
311 |
ttagtttctcaaaaagaggatcatagtgacnnnnnnnttaagagagaagttgac---tggtgattttcaaatctgatcaatctataaaataaatg |
402 |
Q |
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| T |
40724287 |
ttagtttctcaaaaagaggatcatagtgacaaaaaa-ttaagagagaagttgatgattggtgtttttcaaatcttatcaatctataaaataaatg |
40724380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 190 - 337
Target Start/End: Original strand, 53191729 - 53191877
Alignment:
| Q |
190 |
ctgcagaaactccagcgcagatacagagaattccggtgtggtggtcgccggcaaagatactccaaccaagcaataaatttaggggttttgttaaggttgt |
289 |
Q |
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| T |
53191729 |
ctgcaggaactccggcgcagctgcagagaactccggcgtggtggttgctggcaaagttactgcaatcaagcaataagtttagaggttttgttgaggttgc |
53191828 |
T |
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| Q |
290 |
tatggagac-aaaatggctggtttagtttctcaaaaagaggatcatagt |
337 |
Q |
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| T |
53191829 |
tatggagacaaaaatggcaggtttagtttctcaaaaatagaatcatagt |
53191877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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