View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_48 (Length: 423)
Name: NF1376_low_48
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 30 - 395
Target Start/End: Complemental strand, 50821935 - 50821570
Alignment:
| Q |
30 |
ggctatgtgggagcattttgggttcaagccaatacaagatgatgatctgaattttcttctccaaggtaacaaccttgacatcatagagaattttgataga |
129 |
Q |
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| T |
50821935 |
ggctatgtgggagcattttgggttctagccaatacaagatgatgatctgaattttcttctccaaggtaacaaccttgacatcatagagaattttgataga |
50821836 |
T |
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| Q |
130 |
accacattgtgtctcaaaacactgagcagtgaatatgatgatgacgtttaggattcagtttacagtttttgttaaaaagggtagaaatgataatgctact |
229 |
Q |
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| T |
50821835 |
aacacattgtgtctcaaaacactgagcagtgaatatgatgatgacgtttaggattcagtttacagtttttgttaaaaagggtagaaatgataatgctact |
50821736 |
T |
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| Q |
230 |
gatattgctctagttgtctaggctttggatattgtgctagtttcctgttatttcactctctattttcctgttatcctttttgtggtagttatagatgttg |
329 |
Q |
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| T |
50821735 |
gatattgctctagttgtctaggctttggatattgtgctagtttcctgttatttcactctctattttcctgttatcctttttgtggtagttatagatgttg |
50821636 |
T |
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| Q |
330 |
ttgttgttatttgttttgcatcttttagtaaggcttgtgaaaatacaagtgccatgttttaatgtt |
395 |
Q |
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| T |
50821635 |
ttgttgttatttgttttgcatcttttagtaaggcttgtgaaaatacaagtgccatgttttaatgtt |
50821570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 30 - 395
Target Start/End: Original strand, 50853926 - 50854291
Alignment:
| Q |
30 |
ggctatgtgggagcattttgggttcaagccaatacaagatgatgatctgaattttcttctccaaggtaacaaccttgacatcatagagaattttgataga |
129 |
Q |
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| T |
50853926 |
ggctatgtgggagcattttgggttctagccaatacaagatgatgatctgaattttcttctccaaggtaacaaccttgacatcatagagaattttgataga |
50854025 |
T |
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| Q |
130 |
accacattgtgtctcaaaacactgagcagtgaatatgatgatgacgtttaggattcagtttacagtttttgttaaaaagggtagaaatgataatgctact |
229 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50854026 |
aacacattgtgtctcaaaacactgagcagtgaatatgatgatgacgtttaggattcagtttacagtttttgttaaaaagggtagaaatgataatgctact |
50854125 |
T |
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| Q |
230 |
gatattgctctagttgtctaggctttggatattgtgctagtttcctgttatttcactctctattttcctgttatcctttttgtggtagttatagatgttg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50854126 |
gatattgctctagttgtctaggctttggatattgtgctagtttcctgttatttcactctctattttcctgttatcctttttgtggtagttatagatgttg |
50854225 |
T |
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| Q |
330 |
ttgttgttatttgttttgcatcttttagtaaggcttgtgaaaatacaagtgccatgttttaatgtt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50854226 |
ttgttgttatttgttttgcatcttttagtaaggcttgtgaaaatacaagtgccatgttttaatgtt |
50854291 |
T |
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