View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_50 (Length: 412)
Name: NF1376_low_50
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 32842255 - 32842375
Alignment:
| Q |
162 |
agttaagacatcaagattcaagataaatgtttttcaatgtaatttaaattagtggtgaaaaccacatgctggagtgtttagggattgtagattatagccg |
261 |
Q |
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| T |
32842255 |
agttaagacatcaagattcaagataaatgtttttcactgtaatttaaattagtggtgaaaaccacattatggagtgtttaaggattgtagattatagttg |
32842354 |
T |
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| Q |
262 |
ttgagattgagttgaagtctt |
282 |
Q |
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| T |
32842355 |
ttaagcttaagttgaagtctt |
32842375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 153 - 282
Target Start/End: Original strand, 32829563 - 32829695
Alignment:
| Q |
153 |
cgagagttaagttaagacatcaagattcaagataaatgtttttcaatgtaatttaaattagtggtgaaaaccacatgctggagtgtttagggattgtaga |
252 |
Q |
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| T |
32829563 |
cgagagttaggttaagacatcaagattcgatataaatgtttttcgctgtgatttgaattagtggtgaaaaccacgtgctggagtgtttagggattgtaga |
32829662 |
T |
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| Q |
253 |
ttatagcc---gttgagattgagttgaagtctt |
282 |
Q |
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| T |
32829663 |
ttatagccgttgttgagactgagttgaagtctt |
32829695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 32831559 - 32831624
Alignment:
| Q |
308 |
gatattgcacactctcatatggctgagcatccaaataatcatgattttgacaaagctgattatgat |
373 |
Q |
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| T |
32831559 |
gatattgcacactctcatatggtcgagcatccaaataatcatgattttgacaaagctgattatgat |
32831624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 308 - 381
Target Start/End: Original strand, 32844830 - 32844903
Alignment:
| Q |
308 |
gatattgcacactctcatatggctgagcatccaaataatcatgattttgacaaagctgattatgatacacttcc |
381 |
Q |
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| T |
32844830 |
gatattgcacactctcatatgactaagcatccaaataatcatgaatttgatagagctggctatgatacacttcc |
32844903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 279
Target Start/End: Complemental strand, 17936806 - 17936690
Alignment:
| Q |
162 |
agttaagacatcaagattcaagataaatgtttttcaatgtaatttaaattagtggtgaaaaccacatgctggagtgtttagggattgtagattatagccg |
261 |
Q |
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||||||||||||||||||| |||||||| |||| || ||||||||||||||| ||||||||||| ||| |||| ||||||||||| ||||||||||| | |
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| T |
17936806 |
agttaagacatcaagattctagataaatatttt-cactgtaatttaaattagaggtgaaaaccatatgttggattgtttagggatcgtagattatagtgg |
17936708 |
T |
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| Q |
262 |
ttgagattgagttgaagt |
279 |
Q |
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|| || || ||||||||| |
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| T |
17936707 |
ttaagcttaagttgaagt |
17936690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 17933103 - 17933030
Alignment:
| Q |
308 |
gatattgcacactctcatatggctgagcatccaaataatcatgattttgacaaagctgattatgatacacttcc |
381 |
Q |
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||||||||||||| ||||||| || ||||||||||||||||||| ||||| | ||||| |||||||||||||| |
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| T |
17933103 |
gatattgcacactttcatatgactaagcatccaaataatcatgaatttgatagagctggctatgatacacttcc |
17933030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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