View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_low_56 (Length: 401)

Name: NF1376_low_56
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_low_56
NF1376_low_56
[»] chr1 (18 HSPs)
chr1 (41-372)||(45667668-45667992)
chr1 (159-202)||(567833-567876)
chr1 (202-257)||(33976680-33976735)
chr1 (202-253)||(44422693-44422744)
chr1 (108-202)||(19389789-19389883)
chr1 (130-176)||(47885123-47885169)
chr1 (208-305)||(7136971-7137068)
chr1 (217-253)||(21254772-21254808)
chr1 (202-266)||(45769756-45769820)
chr1 (202-257)||(7218095-7218150)
chr1 (131-190)||(7274040-7274099)
chr1 (101-202)||(4019681-4019781)
chr1 (226-271)||(15361058-15361103)
chr1 (208-253)||(25479581-25479626)
chr1 (202-275)||(34290230-34290303)
chr1 (201-253)||(6292486-6292538)
chr1 (217-257)||(35017585-35017625)
chr1 (217-253)||(38651456-38651492)
[»] chr8 (14 HSPs)
chr8 (202-253)||(10075576-10075627)
chr8 (203-253)||(34551115-34551165)
chr8 (217-257)||(1433557-1433597)
chr8 (202-253)||(31862487-31862538)
chr8 (223-253)||(20672765-20672795)
chr8 (217-255)||(26473775-26473813)
chr8 (200-245)||(778850-778895)
chr8 (102-139)||(16162645-16162682)
chr8 (208-253)||(27028831-27028876)
chr8 (214-271)||(42215089-42215146)
chr8 (217-249)||(25097395-25097427)
chr8 (208-252)||(37353275-37353319)
chr8 (208-252)||(41309785-41309829)
chr8 (203-251)||(43709268-43709316)
[»] chr2 (19 HSPs)
chr2 (202-257)||(9477946-9478001)
chr2 (208-259)||(10884540-10884591)
chr2 (202-256)||(36863647-36863701)
chr2 (208-253)||(9530753-9530798)
chr2 (223-276)||(12313175-12313228)
chr2 (210-262)||(19629365-19629417)
chr2 (210-262)||(19826266-19826318)
chr2 (224-275)||(16867755-16867806)
chr2 (217-271)||(35379023-35379077)
chr2 (202-252)||(39983336-39983386)
chr2 (208-257)||(3049974-3050023)
chr2 (217-266)||(9556248-9556297)
chr2 (101-193)||(626309-626401)
chr2 (217-257)||(1939353-1939393)
chr2 (217-253)||(24097817-24097853)
chr2 (227-255)||(25790145-25790173)
chr2 (217-257)||(34652057-34652097)
chr2 (102-202)||(39557750-39557850)
chr2 (101-193)||(41880601-41880693)
[»] chr7 (13 HSPs)
chr7 (96-202)||(425911-426017)
chr7 (204-252)||(30723065-30723113)
chr7 (202-266)||(44821953-44822017)
chr7 (217-266)||(25596042-25596091)
chr7 (145-198)||(46945833-46945886)
chr7 (208-271)||(3968764-3968827)
chr7 (202-247)||(18350738-18350783)
chr7 (202-255)||(39542323-39542376)
chr7 (217-257)||(529384-529424)
chr7 (209-253)||(12792588-12792632)
chr7 (206-266)||(24363613-24363673)
chr7 (130-202)||(31341103-31341175)
chr7 (217-253)||(48917371-48917407)
[»] chr6 (11 HSPs)
chr6 (129-193)||(33068659-33068723)
chr6 (202-257)||(7148660-7148715)
chr6 (101-145)||(7946020-7946064)
chr6 (202-253)||(31812038-31812089)
chr6 (215-257)||(2455817-2455859)
chr6 (204-253)||(18264325-18264374)
chr6 (217-318)||(33887839-33887940)
chr6 (205-253)||(1497978-1498026)
chr6 (217-253)||(3168286-3168322)
chr6 (217-257)||(6647396-6647436)
chr6 (205-257)||(20368201-20368253)
[»] chr5 (15 HSPs)
chr5 (101-172)||(26796342-26796413)
chr5 (101-172)||(26799860-26799931)
chr5 (101-193)||(38104962-38105054)
chr5 (217-324)||(17258837-17258944)
chr5 (101-172)||(26807410-26807481)
chr5 (224-275)||(33533542-33533593)
chr5 (102-149)||(40731174-40731221)
chr5 (203-266)||(41957463-41957526)
chr5 (202-248)||(18543226-18543272)
chr5 (217-266)||(7319020-7319069)
chr5 (208-257)||(11684414-11684463)
chr5 (202-274)||(7907875-7907947)
chr5 (202-266)||(12425565-12425629)
chr5 (130-182)||(33464230-33464282)
chr5 (130-202)||(37063163-37063235)
[»] chr4 (14 HSPs)
chr4 (202-257)||(2996567-2996622)
chr4 (202-266)||(10192278-10192341)
chr4 (217-257)||(50742857-50742897)
chr4 (200-255)||(56186924-56186979)
chr4 (215-257)||(6987762-6987804)
chr4 (100-146)||(35064733-35064779)
chr4 (202-252)||(56480342-56480392)
chr4 (138-191)||(19422335-19422388)
chr4 (224-257)||(24169279-24169312)
chr4 (223-252)||(39063673-39063702)
chr4 (202-271)||(43824277-43824346)
chr4 (209-253)||(27321854-27321898)
chr4 (202-266)||(28300311-28300375)
chr4 (102-146)||(39886719-39886763)
[»] chr3 (15 HSPs)
chr3 (101-172)||(10216871-10216942)
chr3 (101-172)||(10220390-10220461)
chr3 (202-256)||(24158525-24158579)
chr3 (217-257)||(3044280-3044320)
chr3 (210-262)||(45535234-45535286)
chr3 (210-253)||(2825149-2825192)
chr3 (101-172)||(9995854-9995925)
chr3 (101-172)||(10105723-10105794)
chr3 (202-257)||(39602231-39602286)
chr3 (223-257)||(24280726-24280760)
chr3 (203-253)||(40665424-40665474)
chr3 (217-266)||(2719477-2719526)
chr3 (102-139)||(44014946-44014983)
chr3 (101-169)||(10226483-10226551)
chr3 (202-266)||(34382936-34383000)
[»] scaffold0024 (1 HSPs)
scaffold0024 (130-202)||(27485-27557)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 41 - 372
Target Start/End: Complemental strand, 45667992 - 45667668
Alignment:
Q  41 cagagagggtagacagagaataaataatataccaaaacttgctgtcactaatctaaggctctgtttggataaacaaattattttgtaatttatagcataa 140  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45667992 cagagagggtagacagagaataaataatataccaaaacttgcggtcactaatctaaggctctgtttggataaacaaattattttgtaatttatagcataa 45667893  T
Q  141 gcgcttgttatataaatgcttatgaataagttatttttattacacaagataaagtcaagtcataagttataagatattttcttaagctatcctggagagc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  45667892 gcgcttgttatataaatgcttatgaataagttatttttattacacaagataaagtc-------aagttataagatattttcttaagctatcctggagagc 45667800  T
Q  241 ttatgaaaataagttgagatcaacttttgaatatgggatatgctacttttataagttctttcaaagaatgtctcaagtacttattaatatgtaaactcaa 340  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  45667799 ttatgaaaataagttgagatcaacttttaaatatgggatatgctacttttataagttctttcaaagaatgtctcaagtatttattagtatgtaaactcaa 45667700  T
Q  341 ataagttaattcaaacatgccctaggtaaaag 372  Q
    ||||||||||||||||||||||||||||||||    
T  45667699 ataagttaattcaaacatgccctaggtaaaag 45667668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 567833 - 567876
Alignment:
Q  159 cttatgaataagttatttttattacacaagataaagtcaagtca 202  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||    
T  567833 cttatgaataagtcatttttattacacaagataaaatcaagtca 567876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 33976680 - 33976735
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||| |||||||||||    
T  33976680 ataagttataagttgttttcttaacctatcctagagagcttatggaaataagttga 33976735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 44422693 - 44422744
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||| |||||| ||||||  |||||||||||||||||||||||||||||||    
T  44422693 ataagctataagctatttttataagctatcctggagagcttatgaaaataag 44422744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 19389789 - 19389883
Alignment:
Q  108 gataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagttatttttattacacaagataaagtcaagtca 202  Q
    |||| |||| ||||||||||  ||||||||||| ||||| | ||||||   ||||| ||||||||| ||||||||||||| ||||| | ||||||    
T  19389789 gatagacaacttattttgtagcttatagcataaacgcttatcatataataacttataaataagttacttttattacacaatataaaataaagtca 19389883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 47885169 - 47885123
Alignment:
Q  130 ttatagcataagcgcttgttatataaatgcttatgaataagttattt 176  Q
    ||||||||||||||||| | |||||| ||||||||||||||||||||    
T  47885169 ttatagcataagcgcttatcatataattgcttatgaataagttattt 47885123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 7137068 - 7136971
Alignment:
Q  208 tataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaacttttgaatatgggatatgctacttttataagttctttcaaa 305  Q
    |||||| | ||||| ||||||||| |||||| |||||||||||||| ||| |  ||||| ||||||||  ||| || | ||| |||||||||||||||    
T  7137068 tataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtcataagcgattttcataagttctttcaaa 7136971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 21254808 - 21254772
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||||||||||||| |||||||||||||||||||||    
T  21254808 ttttcttaagctatcttggagagcttatgaaaataag 21254772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 45769820 - 45769756
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaactt 266  Q
    |||||||||||| ||||||  |||||||||||| ||| |||||||||||||| | | ||||||||    
T  45769820 ataagttataagctattttgataagctatcctgaagaacttatgaaaataagataaaatcaactt 45769756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 7218150 - 7218095
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    ||||| |||||| | ||||| ||| |||||||||||| ||||||||||||||||||    
T  7218150 ataagctataagttgttttcataacctatcctggagaacttatgaaaataagttga 7218095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 7274099 - 7274040
Alignment:
Q  131 tatagcataagcgcttgttatataaatgcttatgaataagttatttttattacacaagat 190  Q
    ||||||||||| |||| | ||||||||||||||| ||| ||||||||||| ||| |||||    
T  7274099 tatagcataagtgcttatcatataaatgcttatgtatatgttatttttataacaaaagat 7274040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 4019781 - 4019681
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagttatttttattacacaagataaagtcaagt 200  Q
    |||||||||||||||| ||| |||   | |||| ||| |||||||| | ||||||||| |||||||||||| |||| || |||| | |||||| ||||||    
T  4019781 ctgtttggataaacaacttaatttagcacttatggcaaaagcgcttataatataaatgtttatgaataagtaatttcta-tacaaatgataaaatcaagt 4019683  T
Q  201 ca 202  Q
    ||    
T  4019682 ca 4019681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 15361058 - 15361103
Alignment:
Q  226 gctatcctggagagcttatgaaaataagttgagatcaacttttgaa 271  Q
    |||||||||||||||||||||||||||| ||| | |||||| ||||    
T  15361058 gctatcctggagagcttatgaaaataagctgaaaacaacttatgaa 15361103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 25479581 - 25479626
Alignment:
Q  208 tataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    |||||| | ||||| ||||||||||| |||||||||||||||||||    
T  25479581 tataagttgttttcataagctatcctagagagcttatgaaaataag 25479626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 34290230 - 34290303
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaacttttgaatatg 275  Q
    ||||| |||||| | ||||| ||||||||| || ||| |||||||||||||| ||| | |||||| ||||||||    
T  34290230 ataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatg 34290303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 6292486 - 6292538
Alignment:
Q  201 cataagttataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||| ||||||| ||||||| ||| ||||  |||||||||||||||||||||    
T  6292486 cataacttataagctattttcgtaaactattttggagagcttatgaaaataag 6292538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 35017585 - 35017625
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    ||||| |||||| |||||||||||||||| |||||||||||    
T  35017585 ttttcataagctgtcctggagagcttatggaaataagttga 35017625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 38651492 - 38651456
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  38651492 ttttcataagctatcctggagagcttataaaaataag 38651456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 10075627 - 10075576
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  10075627 ataagttataagctattttcataagctatcctagagagcttatgaaaataag 10075576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 34551115 - 34551165
Alignment:
Q  203 taagttataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||||||||    
T  34551115 taagttataagttgttttcttaagttatcctggagagcttatgaaaataag 34551165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 1433557 - 1433597
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  1433557 ttttcataagctatcctggagagcttatgaaaataagttga 1433597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 31862487 - 31862538
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||| |||||||| ||||| |||| |||||| |||||||||||||||||||    
T  31862487 ataagctataagatgttttcataagttatcctagagagcttatgaaaataag 31862538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 253
Target Start/End: Original strand, 20672765 - 20672795
Alignment:
Q  223 taagctatcctggagagcttatgaaaataag 253  Q
    |||||||||||||||||||||||||||||||    
T  20672765 taagctatcctggagagcttatgaaaataag 20672795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 26473813 - 26473775
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagtt 255  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  26473813 ttttcataagctatcctagagagcttatgaaaataagtt 26473775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 778895 - 778850
Alignment:
Q  200 tcataagttataagatattttcttaagctatcctggagagcttatg 245  Q
    |||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  778895 tcataatttataggatattttcataagctatcctagagagcttatg 778850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 16162645 - 16162682
Alignment:
Q  102 tgtttggataaacaaattattttgtaatttatagcata 139  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  16162645 tgtttggataaacaaattaatttgtagtttatagcata 16162682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 27028831 - 27028876
Alignment:
Q  208 tataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    |||||| | ||||| ||||||||| |||||||||||||||||||||    
T  27028831 tataagctgttttcataagctatcttggagagcttatgaaaataag 27028876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 42215146 - 42215089
Alignment:
Q  214 atattttcttaagctatcctggagagcttatgaaaataagttgagatcaacttttgaa 271  Q
    |||||||| ||||||||| ||||||||||||| ||||||| ||| | |||||| ||||    
T  42215146 atattttcataagctatcttggagagcttatgtaaataagctgaaaacaacttatgaa 42215089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 25097395 - 25097427
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaa 249  Q
    ||||| |||||||||||||||||||||||||||    
T  25097395 ttttcataagctatcctggagagcttatgaaaa 25097427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 37353319 - 37353275
Alignment:
Q  208 tataagatattttcttaagctatcctggagagcttatgaaaataa 252  Q
    |||||| | ||||||||||||||| | ||||||||||||||||||    
T  37353319 tataagctgttttcttaagctatctttgagagcttatgaaaataa 37353275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 41309785 - 41309829
Alignment:
Q  208 tataagatattttcttaagctatcctggagagcttatgaaaataa 252  Q
    |||||||||||||| |||||||||||| | || ||||||||||||    
T  41309785 tataagatattttcataagctatcctgaaaagtttatgaaaataa 41309829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 43709268 - 43709316
Alignment:
Q  203 taagttataagatattttcttaagctatcctggagagcttatgaaaata 251  Q
    |||| |||||| | ||||| | |||||||||||||||||||||||||||    
T  43709268 taagctataagttgttttcatgagctatcctggagagcttatgaaaata 43709316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 9477946 - 9478001
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    |||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||    
T  9477946 ataagttataagttgttttcataagctatcctggagaggttatgaaaataagttga 9478001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 10884591 - 10884540
Alignment:
Q  208 tataagatattttcttaagctatcctggagagcttatgaaaataagttgaga 259  Q
    |||||| | ||||| ||||||||||| |||||||||||||||||||||||||    
T  10884591 tataagctgttttcataagctatcctagagagcttatgaaaataagttgaga 10884540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 36863701 - 36863647
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttg 256  Q
    |||||||||||  | ||||| ||||||||| ||||||||||||||||||||||||    
T  36863701 ataagttataaattgttttcataagctatcttggagagcttatgaaaataagttg 36863647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 9530798 - 9530753
Alignment:
Q  208 tataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    |||| ||||||||| |||||||||||||||||||||||||| ||||    
T  9530798 tatatgatattttcataagctatcctggagagcttatgaaagtaag 9530753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 12313228 - 12313175
Alignment:
Q  223 taagctatcctggagagcttatgaaaataagttgagatcaacttttgaatatgg 276  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||| |||| ||||    
T  12313228 taagctatcttggagagcttatgaaaataaggtgaaatcaacttatgaacatgg 12313175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 19629365 - 19629417
Alignment:
Q  210 taagatattttcttaagctatcctggagagcttatgaaaataagttgagatca 262  Q
    |||||| ||||| |||||||| |||||||| ||||||||||||||||| ||||    
T  19629365 taagatgttttcataagctatactggagagtttatgaaaataagttgaaatca 19629417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 19826266 - 19826318
Alignment:
Q  210 taagatattttcttaagctatcctggagagcttatgaaaataagttgagatca 262  Q
    |||||| ||||| |||||||| |||||||| ||||||||||||||||| ||||    
T  19826266 taagatgttttcataagctatactggagagtttatgaaaataagttgaaatca 19826318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 16867755 - 16867806
Alignment:
Q  224 aagctatcctggagagcttatgaaaataagttgagatcaacttttgaatatg 275  Q
    |||||||| ||||||||||||| ||||||||||| | |||||| ||||||||    
T  16867755 aagctatcttggagagcttatggaaataagttgaaaacaacttatgaatatg 16867806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 35379077 - 35379023
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttgagatcaacttttgaa 271  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| | |||||| ||||    
T  35379077 ttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttatgaa 35379023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 39983336 - 39983386
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataa 252  Q
    ||||| |||||| | ||||| ||||||||||||||||||| ||||||||||    
T  39983336 ataagctataagttgttttcataagctatcctggagagctaatgaaaataa 39983386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 3049974 - 3050023
Alignment:
Q  208 tataagatattttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    |||||| | ||||| ||||||||| ||||||||||||||||||| |||||    
T  3049974 tataagctgttttcataagctatcatggagagcttatgaaaatatgttga 3050023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 9556248 - 9556297
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttgagatcaactt 266  Q
    ||||| ||||||||||| || |||||||||||||||||||| ||| ||||    
T  9556248 ttttcataagctatcctagaaagcttatgaaaataagttgaaatctactt 9556297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 626401 - 626309
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagttatttttattacacaagataaa 193  Q
    |||||||||||||||| ||||||||||  |||| | || ||||||| |  | ||| || ||||||||||| ||||| ||  ||||||||||||    
T  626401 ctgtttggataaacaacttattttgtagcttattgtattagcgcttatcttgtaagtggttatgaataagctatttctagaacacaagataaa 626309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 1939393 - 1939353
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  1939393 ttttcataagctatactggagagcttatggaaataagttga 1939353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 24097817 - 24097853
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  24097817 ttttcataagttatcctggagagcttatgaaaataag 24097853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 25790145 - 25790173
Alignment:
Q  227 ctatcctggagagcttatgaaaataagtt 255  Q
    |||||||||||||||||||||||||||||    
T  25790145 ctatcctggagagcttatgaaaataagtt 25790173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 34652097 - 34652057
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    ||||| ||||||||| ||||||||||||| |||||||||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttga 34652057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 39557850 - 39557750
Alignment:
Q  102 tgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagttatttttattacacaagataaagtcaagtc 201  Q
    ||||||||||||||| |||||||| |||  |||| |||| | ||||| |||||| || ||||  ||||| ||||||||| ||| | |||||| | |||||    
T  39557850 tgtttggataaacaacttattttgcaatcaatagaataaacacttgtcatataagtggttatacataagctatttttatgacaaatgataaaataaagtc 39557751  T
Q  202 a 202  Q
    |    
T  39557750 a 39557750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 41880693 - 41880601
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagttatttttattacacaagataaa 193  Q
    |||||||||||||||| ||| |||| |  |||||||| |||||||| | || ||| ||||||| ||||   ||||| ||||||||| ||||||    
T  41880693 ctgtttggataaacaacttactttgcagcttatagcacaagcgcttatcatgtaattgcttataaatatactatttctattacacacgataaa 41880601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 426017 - 425911
Alignment:
Q  96 aggctctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagttatttttattacacaagataaagt 195  Q
    |||| ||||||||||||| || |||||||| |  ||||||||||||||||| || ||||| | |||||||| |||||| || ||| | |||||||||| |    
T  426017 aggccctgtttggataaataacttattttgcagcttatagcataagcgcttattgtataatttcttatgaacaagttaattctataatacaagataaaat 425918  T
Q  196 caagtca 202  Q
     ||||||    
T  425917 aaagtca 425911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 30723113 - 30723065
Alignment:
Q  204 aagttataagatattttcttaagctatcctggagagcttatgaaaataa 252  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||||||    
T  30723113 aagttataagctattttcataagctatcctggagagcttttgaaaataa 30723065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 44821953 - 44822017
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaactt 266  Q
    |||||||||||| | ||||| |||||||| ||||||| |||||||||||||||||| | ||||||    
T  44821953 ataagttataagctgttttcataagctattctggagaacttatgaaaataagttgaaaacaactt 44822017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 25596042 - 25596091
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttgagatcaactt 266  Q
    ||||| ||||||||| ||||||||||||||||||||||||| | ||||||    
T  25596042 ttttcataagctatcttggagagcttatgaaaataagttgaaaacaactt 25596091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 46945833 - 46945886
Alignment:
Q  145 ttgttatataaatgcttatgaataagttatttttattacacaagataaagtcaa 198  Q
    |||| ||||||||||||||||||||| ||||| ||| |||||||||||| ||||    
T  46945833 ttgtgatataaatgcttatgaataagctatttgtataacacaagataaaatcaa 46945886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 3968827 - 3968764
Alignment:
Q  208 tataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaacttttgaa 271  Q
    |||||| ||||||| ||||||||||||||||| ||||| ||||||  ||| |||||||| ||||    
T  3968827 tataagctattttcataagctatcctggagagtttatggaaataacatgaaatcaacttatgaa 3968764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 18350783 - 18350738
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaa 247  Q
    |||||||||||| | ||||| ||||||||| |||||||||||||||    
T  18350783 ataagttataagctgttttcataagctatcatggagagcttatgaa 18350738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 39542376 - 39542323
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagtt 255  Q
    ||||| |||||| | ||| | |||| ||||||||||||||||||||||||||||    
T  39542376 ataagatataagttgtttccataagttatcctggagagcttatgaaaataagtt 39542323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 529384 - 529424
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    ||||| ||||||||| ||||||||||||||||||| |||||    
T  529384 ttttcataagctatcttggagagcttatgaaaatatgttga 529424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 12792632 - 12792588
Alignment:
Q  209 ataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||| ||||||| ||||||||| || ||||||||||||||||||    
T  12792632 ataagctattttcataagctatcttgaagagcttatgaaaataag 12792588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 24363673 - 24363613
Alignment:
Q  206 gttataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaactt 266  Q
    |||||||| | ||||| ||||||||||||||||| ||||| ||||||| ||| | ||||||    
T  24363673 gttataagttgttttcataagctatcctggagaggttatggaaataagctgaaaacaactt 24363613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 31341103 - 31341175
Alignment:
Q  130 ttatagcataagcgcttgttatataaatgcttatgaataagttatttttattacacaagataaagtcaagtca 202  Q
    |||| |||||||||||| | || |||||||||||| ||||| ||||| ||| ||| |||||||| | ||||||    
T  31341103 ttattgcataagcgcttatcatctaaatgcttatgtataagctatttgtataacaaaagataaaataaagtca 31341175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 48917407 - 48917371
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  48917407 ttttcataagctatcttggagagcttatgaaaataag 48917371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 33068723 - 33068659
Alignment:
Q  129 tttatagcataagcgcttgttatataaatgcttatgaataagttatttttattacacaagataaa 193  Q
    |||||||||||||||||| | | ||||||||||||| ||||||||||| ||| ||| ||||||||    
T  33068723 tttatagcataagcgcttatcaaataaatgcttatgtataagttatttctataacaaaagataaa 33068659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 7148660 - 7148715
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    ||||| |||||| ||||||  ||||||| |||||||||||||||||||||||||||    
T  7148660 ataagctataaggtattttaataagctaccctggagagcttatgaaaataagttga 7148715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 7946064 - 7946020
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgct 145  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||    
T  7946064 ctgtttggataaacaacttattttgtagcttatagcataagcgct 7946020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 31812089 - 31812038
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||| |||||| | ||||| ||||||||| |||||||||||||||||||||    
T  31812089 ataagatataagttgttttcataagctatcttggagagcttatgaaaataag 31812038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 2455817 - 2455859
Alignment:
Q  215 tattttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||    
T  2455817 tattttcataagctatcttggagagcttatggaaataagttga 2455859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 18264325 - 18264374
Alignment:
Q  204 aagttataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    |||||||||| ||||||||||| |||||||| |||| ||||| |||||||    
T  18264325 aagttataagctattttcttaaactatcctgaagaggttatggaaataag 18264374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 318
Target Start/End: Original strand, 33887839 - 33887940
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttgagatcaacttttgaatatgggatatgctacttttataagttctttcaaagaatgtctcaa 316  Q
    ||||| |||||||||||| |  ||||||| ||||||||||| | |||||| |||| |||  ||| |||| ||| |||| |||| ||||| |||||| |||    
T  33887839 ttttcataagctatcctgaaatgcttatggaaataagttgaaaacaacttgtgaacatgtcataagctattttcataaattctctcaaacaatgtcacaa 33887938  T
Q  317 gt 318  Q
    ||    
T  33887939 gt 33887940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 1497978 - 1498026
Alignment:
Q  205 agttataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||||||||  ||||| ||| ||||| |||||||||||||||||||||    
T  1497978 agttataagaagttttcataaactatcttggagagcttatgaaaataag 1498026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 3168322 - 3168286
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||||||||||||||||||||||||| | |||||||    
T  3168322 ttttcttaagctatcctggagagcttaaggaaataag 3168286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 6647396 - 6647436
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    ||||| ||||||||| | |||||||||||||||||||||||    
T  6647396 ttttcataagctatcttagagagcttatgaaaataagttga 6647436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 20368253 - 20368201
Alignment:
Q  205 agttataagatattttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    ||||||||| | ||||| |||||| || |||||| ||||||||||||||||||    
T  20368253 agttataagttgttttcataagctttcttggagaacttatgaaaataagttga 20368201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 26796342 - 26796413
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagtt 172  Q
    |||||||||||||||| |||||||| |  |||| ||||||||||||   |||||| ||||||||||||||||    
T  26796342 ctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataagtgcttatgaataagtt 26796413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 26799860 - 26799931
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagtt 172  Q
    |||||||||||||||| |||||||| |  |||| ||||||||||||   |||||| ||||||||||||||||    
T  26799860 ctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataagtgcttatgaataagtt 26799931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 38105054 - 38104962
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagttatttttattacacaagataaa 193  Q
    |||||||||||||||| |||||||| |  ||||||| |||||| || | ||||||  | ||||||||||| ||||||  | ||||||||||||    
T  38105054 ctgtttggataaacaacttattttgcagcttatagcgtaagcgtttatgatataagcggttatgaataagctattttcgtaacacaagataaa 38104962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 324
Target Start/End: Complemental strand, 17258944 - 17258837
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttgagatcaacttttgaatatgggatatgctacttttataagttctttcaaagaatgtctcaa 316  Q
    ||||| ||| |||||||| |||||||||||||||||| ||| | || ||| |||| |||  ||| |||| ||| ||| |||||  ||||||||||| |||    
T  17258944 ttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcataggttctcccaaagaatgtcacaa 17258845  T
Q  317 gtacttat 324  Q
    || |||||    
T  17258844 gtgcttat 17258837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 26807410 - 26807481
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagtt 172  Q
    |||||||||||||||| |||||||| |  |||| ||||||||||||   |||||| || |||||||||||||    
T  26807410 ctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataagtgtttatgaataagtt 26807481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 33533593 - 33533542
Alignment:
Q  224 aagctatcctggagagcttatgaaaataagttgagatcaacttttgaatatg 275  Q
    |||||||| ||||||||||||| ||||||||||| | |||||| ||||||||    
T  33533593 aagctatcttggagagcttatggaaataagttgaaaacaacttatgaatatg 33533542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 40731174 - 40731221
Alignment:
Q  102 tgtttggataaacaaattattttgtaatttatagcataagcgcttgtt 149  Q
    |||||||||||||||||||||||| |  |||||||||||| |||||||    
T  40731174 tgtttggataaacaaattattttgcagcttatagcataagtgcttgtt 40731221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 41957526 - 41957463
Alignment:
Q  203 taagttataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaactt 266  Q
    ||||||||||| | ||||| ||||||||||| |||| |||||||||||||| ||| | ||||||    
T  41957526 taagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaactt 41957463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 18543272 - 18543226
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaa 248  Q
    ||||| |||||| | ||||| ||||||||||||||||||||||||||    
T  18543272 ataagatataagttgttttcataagctatcctggagagcttatgaaa 18543226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 7319069 - 7319020
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttgagatcaactt 266  Q
    ||||| ||||||||| |||||| |||||||||||||| ||||| ||||||    
T  7319069 ttttcataagctatcttggagaacttatgaaaataagctgagaacaactt 7319020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 11684414 - 11684463
Alignment:
Q  208 tataagatattttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    |||||| ||||||| |||||||| |||||||||||| | |||||||||||    
T  11684414 tataagctattttcataagctatgctggagagcttacggaaataagttga 11684463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 7907875 - 7907947
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaacttttgaatat 274  Q
    |||||||||||| | ||||  |||||| || |||||||||||||||| |||| ||| | |||||| |||||||    
T  7907875 ataagttataagttgttttgataagctgtcttggagagcttatgaaattaagctgaaaacaacttatgaatat 7907947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 12425565 - 12425629
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaactt 266  Q
    ||||| |||||| | |||||  |||||||| |||||| |||||||||||||||||| | ||||||    
T  12425565 ataagctataagctgttttcacaagctatcttggagaacttatgaaaataagttgaaaacaactt 12425629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 33464282 - 33464230
Alignment:
Q  130 ttatagcataagcgcttgttatataaatgcttatgaataagttatttttatta 182  Q
    ||||||||||| ||||| | | ||||||||||| ||||||| |||||||||||    
T  33464282 ttatagcataaacgcttatcaaataaatgcttacgaataagctatttttatta 33464230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 37063235 - 37063163
Alignment:
Q  130 ttatagcataagcgcttgttatataaatgcttatgaataagttatttttattacacaagataaagtcaagtca 202  Q
    |||||||||||  |||||| ||||||||||||||| ||||  ||||| ||| ||| |||||||| | ||||||    
T  37063235 ttatagcataaatgcttgtcatataaatgcttatgtataaactatttctataacaaaagataaaataaagtca 37063163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 2996567 - 2996622
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    |||||||||||| | ||||| ||||||||| |||||||| ||||||||||||||||    
T  2996567 ataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttga 2996622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 10192278 - 10192341
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaactt 266  Q
    |||||||||||| | |||||  ||||||||||||||||| |||||||||||||||| | ||||||    
T  10192278 ataagttataagttgttttcaaaagctatcctggagagc-tatgaaaataagttgaaaacaactt 10192341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 50742897 - 50742857
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    ||||| |||||||||||||||||||||||||||| ||||||    
T  50742897 ttttcataagctatcctggagagcttatgaaaatgagttga 50742857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 56186979 - 56186924
Alignment:
Q  200 tcataagttataagatattttcttaagctatcctggagagcttatgaaaataagtt 255  Q
    |||||| ||||||| ||||||| |||| ||||| |||||||||||| |||||||||    
T  56186979 tcataaattataagctattttcataagttatccgggagagcttatggaaataagtt 56186924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 6987804 - 6987762
Alignment:
Q  215 tattttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    |||||| ||| |||||||||||||||||||| |||||||||||    
T  6987804 tatttttttacgctatcctggagagcttatggaaataagttga 6987762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 35064733 - 35064779
Alignment:
Q  100 tctgtttggataaacaaattattttgtaatttatagcataagcgctt 146  Q
    ||||||||||||||||| ||| |||| ||||||||||| ||||||||    
T  35064733 tctgtttggataaacaacttaatttgcaatttatagcaaaagcgctt 35064779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 56480342 - 56480392
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataa 252  Q
    |||||||||||| | ||||| ||| ||||| ||||||||||||||||||||    
T  56480342 ataagttataagctgttttcataaactatcttggagagcttatgaaaataa 56480392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 19422335 - 19422388
Alignment:
Q  138 taagcgcttgttatataaatgcttatgaataagttatttttattacacaagata 191  Q
    ||||||||| | ||||||||||||||| ||||||||||| ||| ||| ||||||    
T  19422335 taagcgcttatcatataaatgcttatgtataagttatttctataacaaaagata 19422388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 24169279 - 24169312
Alignment:
Q  224 aagctatcctggagagcttatgaaaataagttga 257  Q
    |||||||| |||||||||||||||||||||||||    
T  24169279 aagctatcttggagagcttatgaaaataagttga 24169312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 252
Target Start/End: Complemental strand, 39063702 - 39063673
Alignment:
Q  223 taagctatcctggagagcttatgaaaataa 252  Q
    ||||||||||||||||||||||||||||||    
T  39063702 taagctatcctggagagcttatgaaaataa 39063673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 43824277 - 43824346
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaacttttgaa 271  Q
    |||||||||||| | ||||| |||| ||||||||| |||||||| ||||||| ||| | |||||| ||||    
T  43824277 ataagttataagcttttttcgtaagttatcctggaaagcttatggaaataagctgaaaacaacttatgaa 43824346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 27321898 - 27321854
Alignment:
Q  209 ataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||| |||||||  ||||||||||||||||||||||| ||||||    
T  27321898 ataagctattttcaaaagctatcctggagagcttatgacaataag 27321854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 28300375 - 28300311
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaactt 266  Q
    ||||| |||||  ||||||| || |||||| || |||||||||||||||||||||| | ||||||    
T  28300375 ataagctataaactattttcataggctatcttgaagagcttatgaaaataagttgaaaacaactt 28300311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 39886763 - 39886719
Alignment:
Q  102 tgtttggataaacaaattattttgtaatttatagcataagcgctt 146  Q
    |||||||||||||||||||||||| |  ||||||||||| |||||    
T  39886763 tgtttggataaacaaattattttgcagcttatagcataaacgctt 39886719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 10216871 - 10216942
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagtt 172  Q
    |||||||||||||||| |||||||| |  |||| ||||||||||||   |||||| ||||||||||||||||    
T  10216871 ctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataagtgcttatgaataagtt 10216942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 10220390 - 10220461
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagtt 172  Q
    |||||||||||||||| |||||||| |  |||| ||||||||||||   |||||| ||||||||||||||||    
T  10220390 ctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataagtgcttatgaataagtt 10220461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 24158579 - 24158525
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttg 256  Q
    |||||| ||||| | ||||| ||||||||||||||||||||||| ||||||||||    
T  24158579 ataagtaataagctgttttcataagctatcctggagagcttatggaaataagttg 24158525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 3044320 - 3044280
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  3044320 ttttcttatgctaacctggagagcttatgaaaataagttga 3044280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 45535286 - 45535234
Alignment:
Q  210 taagatattttcttaagctatcctggagagcttatgaaaataagttgagatca 262  Q
    |||||| ||||| |||||||| |||||||| ||||||||||||||||| ||||    
T  45535286 taagatgttttcataagctatactggagagtttatgaaaataagttgaaatca 45535234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 2825149 - 2825192
Alignment:
Q  210 taagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    |||| ||||||| ||||||||| |||||||||||||||||||||    
T  2825149 taagttattttcataagctatcttggagagcttatgaaaataag 2825192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 9995854 - 9995925
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagtt 172  Q
    |||||||||||||||| |||||||| |  |||| ||||||||||||   |||||| || |||||||||||||    
T  9995854 ctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataagtggttatgaataagtt 9995925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 10105723 - 10105794
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataagtt 172  Q
    |||||||||||||||| |||||||| |  ||||  |||||||||||   |||||| ||||||||||||||||    
T  10105723 ctgtttggataaacaacttattttgcaccttatctcataagcgcttaccatataagtgcttatgaataagtt 10105794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 39602286 - 39602231
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttga 257  Q
    |||||||||||| | ||||| ||||||||| | |||| ||||||||||||||||||    
T  39602286 ataagttataagctgttttcataagctatctttgagaacttatgaaaataagttga 39602231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 24280726 - 24280760
Alignment:
Q  223 taagctatcctggagagcttatgaaaataagttga 257  Q
    ||||||||| |||||||||||||||||||||||||    
T  24280726 taagctatcatggagagcttatgaaaataagttga 24280760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 40665424 - 40665474
Alignment:
Q  203 taagttataagatattttcttaagctatcctggagagcttatgaaaataag 253  Q
    ||||||||||||| ||||| |||| |||| |||||||||||| ||||||||    
T  40665424 taagttataagatgttttcataagttatcttggagagcttataaaaataag 40665474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 2719477 - 2719526
Alignment:
Q  217 ttttcttaagctatcctggagagcttatgaaaataagttgagatcaactt 266  Q
    ||||| ||||||||| |||||| |||||||||||||| ||||| ||||||    
T  2719477 ttttcataagctatcttggagaacttatgaaaataagctgagaacaactt 2719526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 44014983 - 44014946
Alignment:
Q  102 tgtttggataaacaaattattttgtaatttatagcata 139  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  44014983 tgtttggataaacaaattaatttgtagtttatagcata 44014946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 10226483 - 10226551
Alignment:
Q  101 ctgtttggataaacaaattattttgtaatttatagcataagcgcttgttatataaatgcttatgaataa 169  Q
    ||||||||||||||||  ||||||| |  |||| ||||||||||||   |||||| |||||||||||||    
T  10226483 ctgtttggataaacaacctattttgcaccttatcgcataagcgcttaccatataagtgcttatgaataa 10226551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 34382936 - 34383000
Alignment:
Q  202 ataagttataagatattttcttaagctatcctggagagcttatgaaaataagttgagatcaactt 266  Q
    |||||||||||| | ||||| |||||||||||| | |||||| ||||||||| ||| | ||||||    
T  34382936 ataagttataagttcttttcataagctatcctgaaaagcttaagaaaataagatgaaaacaactt 34383000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 27485 - 27557
Alignment:
Q  130 ttatagcataagcgcttgttatataaatgcttatgaataagttatttttattacacaagataaagtcaagtca 202  Q
    ||||||||||||| ||| | || ||| |||||||| ||||||||||| ||| ||| |||||||| | ||||||    
T  27485 ttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtca 27557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University