View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_59 (Length: 393)
Name: NF1376_low_59
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 36609668 - 36609311
Alignment:
| Q |
30 |
ctgaaaatacaaagagaaaatcataacgatggatcattacattacatgtatttaatttgattttgatcttgagaagatgttataggtaggataggaagag |
129 |
Q |
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| T |
36609668 |
ctgaaaatacaaagagaaaatcataacgatggatcattacattacatgtatttaatttgattttgatcttgagaagatgttataggtcggataggaagag |
36609569 |
T |
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| Q |
130 |
atggggagagggtgagggtattaataatatcctcagccccaa----agatnnnnnnnnnnnnnnggttatatatatggttatggtaattgtcaataatat |
225 |
Q |
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| T |
36609568 |
atgggaagagggtgagggtattaataatatcctcagccccaaagatagatagagagagagagagggttatatatatggttatggtaattgtcaataatat |
36609469 |
T |
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| Q |
226 |
aataatgaaaatggtgaaaacatatgaagagagttaaaagagggtgataattatgagnnnnnnnnnnnncaattggaatgaatagaagtatgaggtgtag |
325 |
Q |
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| T |
36609468 |
aataatgaaaatggtgaaaacatatgaagagagttaaaagaggatgataattatgagaaaaacaaaaaacaattggaatgattagaagtatgaggtgtag |
36609369 |
T |
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| Q |
326 |
tgatggagcaaagttagcaattaggaaacgttgccgggtccaactgagatggcctatg |
383 |
Q |
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| T |
36609368 |
tgatggagcaaagttagcaattaggaaacgttgccgggtccaactgagatggcctatg |
36609311 |
T |
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