View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_6 (Length: 729)
Name: NF1376_low_6
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 320 - 667
Target Start/End: Complemental strand, 38556045 - 38555698
Alignment:
| Q |
320 |
ctgaaattcacaatgagaacagctggtcaaaggcaagcatgtttttacagtttacgttcattgtttattttaggaatggaaacaggaaatggtatatgga |
419 |
Q |
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| T |
38556045 |
ctgaaattcacaatgagaacagctggtcaaaggcaaacatgtttttacagttcacgttcattgataattttaggaatggaaacaggaaatggtatatgga |
38555946 |
T |
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| Q |
420 |
gcctaatatttgtataaaccagatccaccagcaacaaccatgcaatcgacctatgttcaggttaatgtaatgcacaacaaattatctaagaaactatacc |
519 |
Q |
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| T |
38555945 |
gcctaatatttgtataaaccagatccaccagcaacaaccatgcaatcgacctatgttcaggttaatgtaatgcacaacaaaatatctaagaaactatacc |
38555846 |
T |
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| Q |
520 |
agaggatcggcaggttcattgtccgttttctgagccacaatttcacttattacattgaccacgtcagttgctatgtccactgcagttgcctcaatcttgt |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
38555845 |
agaggatcggcaggttcattgtccgttttctgagccacaatttcacttattacattgaccacgtcagttgctgtgtctactgcagttgcctcaatcttgt |
38555746 |
T |
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| Q |
620 |
cccgatcatcacttaaagactctaaattagcattgcaacctgtctctg |
667 |
Q |
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| T |
38555745 |
cccgatcatcacttaaagactctaaactagcattgcaacctgtctctg |
38555698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 38556364 - 38556089
Alignment:
| Q |
1 |
tgtatgctaattaacgacacttttaatatttcttttaaatgttcatacagttctgttgatatttttaagtttgaatatatggcaaaattttccatataat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38556364 |
tgtatgctaattaacgacacttttaatatttcttttaaatgttcatacaattctgttgatatttttaagtttgaatatatggcaaaattttccatataat |
38556265 |
T |
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| Q |
101 |
tccattggtcaaagagtaaatcatcatcaaaaccattttaatattccccaatctacatacataaaactaaggaccatttacttcccaaaaatgtttccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38556264 |
tccattggtcaaagagtaaatcatcatcaaaaccattttaatattccccaatctacatacataaaactaaggaccatttacttcccaaaaatgtttccaa |
38556165 |
T |
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| Q |
201 |
aatgtggcaattttcatttcaataaccatatgtaggttgtgagcaatctggtgttttcggaaacagtgaaaagaac |
276 |
Q |
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| T |
38556164 |
aatgtgtcaattttcatttcaataaccatatgtaggttgtgagcaacctggtgttttcggaaacagtgaaaagaac |
38556089 |
T |
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