View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_60 (Length: 393)
Name: NF1376_low_60
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 364
Target Start/End: Complemental strand, 25146339 - 25145990
Alignment:
| Q |
15 |
agatggacatcatcatcaactctcttattagggcaaacagttattctaattatacaaaacctataataagaaactaggcaccaaaggtgattggtaggtt |
114 |
Q |
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| T |
25146339 |
agatgaacatcatcatcaactctcttattagggcaaacagttattctaattatacaaaacctataataagaaactaggcaccaaaggtgattggtaggtt |
25146240 |
T |
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| Q |
115 |
gcttcagccagctgactccaagaaaggttccaggtttggttgctgaattccgaggtagtggatgatcccagttcaaaacctgtaggaaaaacattctcat |
214 |
Q |
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| T |
25146239 |
gcttcagccagctgactccaagaaaggttccaggtttggttgctgaattccgaggtagtggatgatcccagttcaaaacctgtaggaaaaacattctcat |
25146140 |
T |
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| Q |
215 |
ttgagacctttttctttttcgctgttcgctgttcttcgtcggattgtgttttaaaggattcagattcctcggaaagagagggcaaaggggttgctttacc |
314 |
Q |
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| T |
25146139 |
ttgtgacctttttctttttcgctgttcgatgttcttcgtcggattgtgttttaaaggattcagattcctcggaaagagagggcaaaggggttgctttacc |
25146040 |
T |
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| Q |
315 |
gacaaaaggcttgcaagcttttcttgttatatttctgatttgattacttt |
364 |
Q |
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| T |
25146039 |
aacaaaaggcttgcaagcttttcttgtaattgttctgatttgattacttt |
25145990 |
T |
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