View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_63 (Length: 390)
Name: NF1376_low_63
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 30 - 384
Target Start/End: Original strand, 14550730 - 14551085
Alignment:
| Q |
30 |
ggtgatatacaagattattaaaactttcacatgcactcccggaatttaagctgttttctacagcagctttttcgtttgaaagaacgttcaatgccatgaa |
129 |
Q |
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| T |
14550730 |
ggtgatatacaagattattaaaactttcacatgcactcccggaatttaagctgttttctacagcagctttttcgtttgaaagaacgttcaatgccatgaa |
14550829 |
T |
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| Q |
130 |
tatcttnnnnnnn-acgcactctgccttaccctgtcctagtgctttgttttgttattgttcactatgagcttctgctattaacctttagacaattggagg |
228 |
Q |
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| T |
14550830 |
tatcttccccccccacgcactctgccttaccctgtcttagtgctttgttttgttattgttcactatgagcttctgctattaacctttagacaattggagg |
14550929 |
T |
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| Q |
229 |
aaccataacactagtcgatttatagggtccctctttggaaaagaaacctatcttattctcttgatagtagagtatagttttggttgggacatttgctttt |
328 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14550930 |
aaccataacacttgtcgatttagagggtccctctttggaaaagaaacctatcttattctcttgatagtagagtatagttttggttgggacatttgctttt |
14551029 |
T |
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| Q |
329 |
gggaacaattttcgtactcatgctactactggcatgttacaaggtcttcatctcac |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14551030 |
gggaacaattttcgtactcatgctactactggcatgttacaaggtcttcatttcac |
14551085 |
T |
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