View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_68 (Length: 379)
Name: NF1376_low_68
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 227 - 368
Target Start/End: Original strand, 38629627 - 38629768
Alignment:
| Q |
227 |
tgtgtgaccgcttatactcttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaatagtgaattactcttcgaattatatatgttgg |
326 |
Q |
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| T |
38629627 |
tgtgttaccgcttatactcttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaatagtgaattactcttcgaattatatatgttgg |
38629726 |
T |
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| Q |
327 |
attggatcatttcaatatttactgcctacagatttggttctt |
368 |
Q |
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| T |
38629727 |
attggatcatttcaatatttactgcctatagatttggttctt |
38629768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 38629428 - 38629556
Alignment:
| Q |
28 |
catatgggttccttagatgtgctgacaggttctgaaggtgagattagggagcgttgtagcgttgttaattaattataattaactgcagcaccttcttgat |
127 |
Q |
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| T |
38629428 |
catatgggttccttagatgtgctgacaggttctgaaggtgagattagggagcgttgtagcgttgttaattaattataattaactgcagcaccttcttgat |
38629527 |
T |
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| Q |
128 |
cttcagataatttgttcatagattcaaag |
156 |
Q |
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| T |
38629528 |
cttcagataatttgttcatagattcaaag |
38629556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 38696630 - 38696548
Alignment:
| Q |
227 |
tgtgtgaccgcttatactcttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaa---tagtgaattact |
306 |
Q |
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| T |
38696630 |
tgtgtgaccgtttgtactctttatcaattcaagtgtatatgtgaaatcaagtgtaataaaacgtgaaaaggtagtgaattact |
38696548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 38696832 - 38696763
Alignment:
| Q |
28 |
catatgggttccttagatgtgctgacaggttctgaaggtgagattagggagcgttgtagcgttgttaatt |
97 |
Q |
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| T |
38696832 |
catatgggtaacttggatgtgttgacaggttctcaaggtgagattagggagtactgcagcgttgttaatt |
38696763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 32622431 - 32622554
Alignment:
| Q |
35 |
gttccttagatgtgctgacaggttctgaaggtgagattagggagcgttgtagcgttgttaattaattataattaactgcagcaccttcttgatcttcaga |
134 |
Q |
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| T |
32622431 |
gttccttagatgtgttgacaggttctgaaggcaagattagggagtgttgcagcgctgttgatcaatta--attaactacaacaccttcttgatcttcata |
32622528 |
T |
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| Q |
135 |
taatttgttcatagattcaaagatag |
160 |
Q |
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| T |
32622529 |
aaatttgttcatagatgcaaagatag |
32622554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 39451059 - 39450951
Alignment:
| Q |
50 |
tgacaggttctgaaggtgagattagggagcgttgtagcgttgttaattaattataattaactgcagcaccttcttgatcttcagataatttgttcataga |
149 |
Q |
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||||||||||||||||||||| | ||||| | || | |||||| ||| ||||| ||||| ||||||| ||||||||||||| | | |||||||||||| |
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| T |
39451059 |
tgacaggttctgaaggtgagagtggggagtgctgcaacgttgtcaatcaatta--attaattgcagcagcttcttgatcttccaaaattttgttcataga |
39450962 |
T |
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| Q |
150 |
ttcaaagatag |
160 |
Q |
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| |||| |||| |
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| T |
39450961 |
tgcaaatatag |
39450951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 8234731 - 8234839
Alignment:
| Q |
50 |
tgacaggttctgaaggtgagattagggagcgttgtagcgttgttaattaattataattaactgcagcaccttcttgatcttcagataatttgttcataga |
149 |
Q |
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||||||||||||||||||||| ||||||| | || | |||||| ||||||||| ||||| ||||||| ||||||||||||| || |||||||||||||| |
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| T |
8234731 |
tgacaggttctgaaggtgagagtagggagtgatgcaacgttgtcaattaatta--attaattgcagcagcttcttgatcttccgaaaatttgttcataga |
8234828 |
T |
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| Q |
150 |
ttcaaagatag |
160 |
Q |
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| |||| |||| |
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| T |
8234829 |
tgcaaatatag |
8234839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 13404462 - 13404354
Alignment:
| Q |
50 |
tgacaggttctgaaggtgagattagggagcgttgtagcgttgttaattaattataattaactgcagcaccttcttgatcttcagataatttgttcataga |
149 |
Q |
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||||||||||||||||||||| ||||||| | || | |||||| ||| ||||| ||||| ||||||| ||||||||||||| || |||||||||||||| |
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| T |
13404462 |
tgacaggttctgaaggtgagagtagggagtgatgcaacgttgtcaatcaatta--attaattgcagcagcttcttgatcttccgaaaatttgttcataga |
13404365 |
T |
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| Q |
150 |
ttcaaagatag |
160 |
Q |
| |
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| |||| |||| |
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| T |
13404364 |
tgcaaatatag |
13404354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 36981607 - 36981499
Alignment:
| Q |
50 |
tgacaggttctgaaggtgagattagggagcgttgtagcgttgttaattaattataattaactgcagcaccttcttgatcttcagataatttgttcataga |
149 |
Q |
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|||||||||||||| |||||| ||||||| | || | |||||| ||| ||||| ||||| ||||||| ||||||||||||| || |||||||||||||| |
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| T |
36981607 |
tgacaggttctgaaagtgagagtagggagtgctgcaacgttgtcaatcaatta--attaattgcagcagcttcttgatcttccgaaaatttgttcataga |
36981510 |
T |
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| Q |
150 |
ttcaaagatag |
160 |
Q |
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| |||| |||| |
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| T |
36981509 |
tgcaaatatag |
36981499 |
T |
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