View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_69 (Length: 376)
Name: NF1376_low_69
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 5173434 - 5173802
Alignment:
| Q |
1 |
caaagcctaactttctgtagtgagtctttgatctctgctacccatcttccggacggcctttgacgaactcctacaaacctgtggtgacctcttgatgatt |
100 |
Q |
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| T |
5173434 |
caaagcctaactttctgtagtgagtctttgatctctgctacccatcttccggacggcctttgacgaactcctacaaacctgtggtgacctcttgatgatt |
5173533 |
T |
|
| Q |
101 |
tctttcggctacggattccattatcagttgcttgtgctaccatgtttgcaaattccgggttattgagttagatttctaatgataaaaatagatttgatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173534 |
tctttcggctacggattccattatcagttgcttgtgctaccatgtttgcaaattccgggttattgagttagatttctaatgataaaaatagatttgatgt |
5173633 |
T |
|
| Q |
201 |
ctcaattgtgtcactaaa-tttggatgacgaaccttttgaacttcaattgtagatcatttataaacttaaatttgaaagcagcatttttagctataggat |
299 |
Q |
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| T |
5173634 |
ctcaattgtgtcactaaattttggatgacgaaccttttgaacttcaattgtagatcatttataaacttaaatttgaaagcagcatttttagctataggat |
5173733 |
T |
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| Q |
300 |
aatgacaagtaacaacatgtcaaaagcctatgcacataattatttatcgttgtaaatcggatattcttc |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5173734 |
aatgacaagtaacaacatgtcaaaagcctatgcacataattatttatcgttgtaaatcggatatccttc |
5173802 |
T |
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