View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_78 (Length: 353)
Name: NF1376_low_78
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 2572647 - 2572967
Alignment:
| Q |
14 |
agagtgaagtggaggggagactcggctctctctgatggcaagactcaaaatgtata----------tatatatgacatggcataaactttaactacaatt |
103 |
Q |
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| T |
2572647 |
agagtgaagtggaggggagactcggctctctctgatggcaagactcaaaatgtatataaatatatatatatatgacatggcataaactttaactacaatt |
2572746 |
T |
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| Q |
104 |
ttgcactaggcccaatataactttatacaatgctctatatatgtgagtgttttttgatataaattctttatgaacaatcatgtgtattatatatttttgg |
203 |
Q |
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| T |
2572747 |
ttgcactaggcccaatataactttatacactgctctatatatgtgagtgttttttgatataaattctttacaaacaatcatgtgtattatatatttttgg |
2572846 |
T |
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| Q |
204 |
caggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttggatggccgatgtcatttacagtgagcttgttgagttgggctgctgttg |
303 |
Q |
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| T |
2572847 |
caggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttggatggccgatgtcatttacagtgagcttgttgagttgggctgctgttg |
2572946 |
T |
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| Q |
304 |
aatatgaaagtgagatttctt |
324 |
Q |
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| T |
2572947 |
aatatgaaagtgagatttctt |
2572967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 183 - 324
Target Start/End: Original strand, 2562843 - 2562984
Alignment:
| Q |
183 |
atgtgtattatatatttttggcaggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttggatggccgatgtcatttacagtgagct |
282 |
Q |
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| T |
2562843 |
atgtgtattatatatctttggcaggtgaatttggttggaggatactatgatgctggtgataatgtaaagtttggatggccaatgtcatttacagtcagct |
2562942 |
T |
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| Q |
283 |
tgttgagttgggctgctgttgaatatgaaagtgagatttctt |
324 |
Q |
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| T |
2562943 |
tattgagttgggctgctgttgaatatgaaagtgagatttctt |
2562984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 2562119 - 2562180
Alignment:
| Q |
14 |
agagtgaagtggaggggagactcggctctctctgatggcaagactcaaaatgtatatatata |
75 |
Q |
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|||||||||||||||||||| || || |||||||||||||| |||||||||||| ||||||| |
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| T |
2562119 |
agagtgaagtggaggggagattcagcactctctgatggcaaaactcaaaatgtacatatata |
2562180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 28582497 - 28582445
Alignment:
| Q |
204 |
caggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttgg |
256 |
Q |
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|||||||| ||||| ||||| ||||| || ||||||||| ||||||||||||| |
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| T |
28582497 |
caggtagacttggtgggagggtactatgatgcaggtgatcatgtgaagtttgg |
28582445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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