View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_8 (Length: 677)
Name: NF1376_low_8
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 16 - 580
Target Start/End: Complemental strand, 46108974 - 46108410
Alignment:
| Q |
16 |
atggaatggagatgatgttnnnnnnncgagcaccaaaaacataaactgcacaaacaggttcttaaagcacgagaaccaacaatgctcaccttaattatgt |
115 |
Q |
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| T |
46108974 |
atggaatggagataatgttaaaaaaacgagcaccaaaaacataaactgcacaaacatgttcttaaagcacgagaaccaacaatgctcaccttaattatgt |
46108875 |
T |
|
| Q |
116 |
tgatatcattgaagctacggatagcaaagtatcgtcgcaaattccaaatcttagtcggatttctcacaacattgtcggcgaacttgtgattaggaatatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46108874 |
tgatatcattgaagctacggatagcaaagtatcgtcgcaaattccaaatcttagtcggatttctcacaacattgtccgcgaacttgtgattaggaatatg |
46108775 |
T |
|
| Q |
216 |
aactgcctcacgatcagcgaatttgtgattagggatataatttgggtctctaataatggtaattttcccccaaccataatattcctggagaaaagataaa |
315 |
Q |
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| T |
46108774 |
aactgcctcacgatcagcgaatttgtgattagggatataatttgggtctctaataatggtaattttcccccaaccataatattcctggagaaaagataaa |
46108675 |
T |
|
| Q |
316 |
atatgaatacaacatgagaaaagtaatgcaaagaagttcaaggccgtcaataattaatgacataacactatactccttaattatatgtaaaagttaattt |
415 |
Q |
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| T |
46108674 |
atatgaatacaacatgagaaaagtaatgcaaagaagttcaaggccgtcaataattactgacataacactatagtccttaattatatgtaaaagttaattt |
46108575 |
T |
|
| Q |
416 |
taagtatatacaaaccttaattggggccaaaatatcatatggttcatccagtattccatcccggccatccaatgtatgttgtggcaaaaatatcaccggc |
515 |
Q |
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| T |
46108574 |
taagtatatgcaaaccttaattggggccaaaatatcatatggttcatccagtattccatcccggccatccaatgtatgttgtggcaaaaatatcaccggc |
46108475 |
T |
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| Q |
516 |
aaagatcgcagaactacaaagagcgctccagcaaggattatagtaatagttggaaggaagtatgt |
580 |
Q |
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| T |
46108474 |
aaagatcgcagaactacaaagagcgctccagcaaggattatagtaatagttggaaggaagtatgt |
46108410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 46099001 - 46098938
Alignment:
| Q |
168 |
agtcggatttctcacaacattgtcggcgaacttgtgattaggaatatgaactgcctcacgatca |
231 |
Q |
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| T |
46099001 |
agtcagatttctcacaacattgacagtgaacttgtgattaggaatatgaactgcctcacgatca |
46098938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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