View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_80 (Length: 353)
Name: NF1376_low_80
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 39142377 - 39142123
Alignment:
| Q |
1 |
ttcttgacaaaacataaaatgttgctaaggttgtttcatgtttccaaagaaacatttaccattaacaatatatatgatgaagatgatggtagtggtcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39142377 |
ttcttgacaaaacataaaatgttgctaaggttgtttcatgtttccaaagaaacatttaccattaacaatatatatgatgaagatgatggtagtggtcttt |
39142278 |
T |
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| Q |
101 |
ttgaagcaggtgatgaaaatgaaacgtaac-nnnnnnntgagagacagagagagtaacctagaaatgaaagtgaaagaggaaagtgtaaaggaaggactc |
199 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39142277 |
ttgaagcaggtgatgaaaatgaaacgtaacaaaaaaaatgagagacagagagagtaacctagaaatgaaagtgaaagaggaaagtgtaaaggaaggactc |
39142178 |
T |
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| Q |
200 |
tggtcaaggnnnnnnnntgaagaaatggccaaaacgtctagtctatagatatagc |
254 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39142177 |
tggtcaaggaaaaaaaatgaagaaatggccaaaacgtctagtctatagatatagc |
39142123 |
T |
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