View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_low_94 (Length: 330)
Name: NF1376_low_94
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_low_94 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 19475341 - 19475462
Alignment:
| Q |
79 |
aataccaagttataaaactaacattgtgatgcttggtgatggaagtgattctactgtcatcactggtaacagaagtgttgttgatggatggaccactttc |
178 |
Q |
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| T |
19475341 |
aataccaagttataaaactaacattgtgatgcttggtgatggaagtgattctactgtcatcactggtaacagaagtgttgttgatggatggaccactttc |
19475440 |
T |
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| Q |
179 |
agatctgcaactttaggtgaag |
200 |
Q |
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| T |
19475441 |
agatctgcaactttaggtgaag |
19475462 |
T |
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Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 261 - 330
Target Start/End: Complemental strand, 41578919 - 41578850
Alignment:
| Q |
261 |
aataagtggccataatcacgactcataatcatggcaaataacagtcaccattggtgatactgaaaattcc |
330 |
Q |
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| T |
41578919 |
aataagtggccataatcacgactcaaaatcatggcaaataacagtcgccattggtgatactgaaaattcc |
41578850 |
T |
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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 51547480 - 51547566
Alignment:
| Q |
110 |
cttggtgatggaagtgattctactgtcatcactggtaacagaagtgttgttgatggatggaccactttcagatctgcaactttaggt |
196 |
Q |
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| T |
51547480 |
cttggtgatggaagggatcaaactgtcattactggcaatagaagtgatgttgatggatggaccaccttcagatctgcaactttaggt |
51547566 |
T |
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