View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1377-INSERTION-2 (Length: 122)

Name: NF1377-INSERTION-2
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1377-INSERTION-2
NF1377-INSERTION-2
[»] chr3 (1 HSPs)
chr3 (8-122)||(47170798-47170912)
[»] chr1 (1 HSPs)
chr1 (70-122)||(42163326-42163378)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 47170798 - 47170912
Alignment:
Q  8 cttttttattccaatttttgatgcataaatatatttgtttttaatcaaaagaaatttggtcatgttttttctagggcgtggagactgaggacaatgaata 107  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47170798 cttttttattcaaatttttgatgcataaatatatttgtttttaatcaaaagaaatttggtcatgttttttctagggcgtggagactgaggacaatgaata 47170897  T
Q  108 tttcatcactcctga 122  Q
    |||||||||||||||    
T  47170898 tttcatcactcctga 47170912  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 42163378 - 42163326
Alignment:
Q  70 tgttttttctagggcgtggagactgaggacaatgaatatttcatcactcctga 122  Q
    ||||||| |||||| ||||| | |||||| |||||||| ||||||||||||||    
T  42163378 tgtttttgctagggtgtggatattgaggataatgaatacttcatcactcctga 42163326  T

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