View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_106 (Length: 221)
Name: NF13771_high_106
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_106 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 41896576 - 41896792
Alignment:
| Q |
1 |
cttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactgtaacacaattcataaaataatcaataatagtaaatatgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896576 |
cttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactgtaacacaattcataaaataatcaataatagtaaatatgca |
41896675 |
T |
|
| Q |
101 |
ttcaaatattttatgaagaatatgataaaaattgctaaatttatttatgagaaccgtattacggagaaagtaacgatatttgtaatcagcggtccgagac |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896676 |
ttcaaatactttatgaagaatatgataaaaattgctaaatttatttatgagaaacgtattacggagaaagtaacgatatttgtaatcagcggtccgagac |
41896775 |
T |
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| Q |
201 |
tttggaattgctctctt |
217 |
Q |
| |
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|||||||||||| |||| |
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| T |
41896776 |
tttggaattgctttctt |
41896792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 41891838 - 41891943
Alignment:
| Q |
1 |
cttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactgtaacacaattcataaaataatcaataatagtaaatatgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||||| |||| |||||||| | ||| ||| |||||| |
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| T |
41891838 |
cttcaaatctttctaagcagaatttcataaattcttcagtaaatggtctcttgtaacctttaacacagttcagaaaataataatcaatgataagtatgca |
41891937 |
T |
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| Q |
101 |
ttcaaa |
106 |
Q |
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|||||| |
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| T |
41891938 |
ttcaaa |
41891943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34453801 - 34453742
Alignment:
| Q |
1 |
cttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
60 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34453801 |
cttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
34453742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41829118 - 41829059
Alignment:
| Q |
1 |
cttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
60 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41829118 |
cttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
41829059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41885594 - 41885653
Alignment:
| Q |
1 |
cttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41885594 |
cttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
41885653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 41893545 - 41893616
Alignment:
| Q |
146 |
tatgagaaccgtattacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctctctt |
217 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| || |||||| || |||||||||||||||||| |||| |
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| T |
41893545 |
tatgagaaatgtattacggagaaagtaacgatattcgtgatcagcagttcgagactttggaattgctttctt |
41893616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 41901773 - 41901833
Alignment:
| Q |
157 |
tattacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctctctt |
217 |
Q |
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||||||| ||||||||| |||||||||||||||| || |||||||||||||||||| |||| |
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| T |
41901773 |
tattacgtagaaagtaaggatatttgtaatcagcagttcgagactttggaattgctttctt |
41901833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41901609 - 41901660
Alignment:
| Q |
1 |
cttcaaatctttctaagcagaatttcataaattcttcactaaatggcctctt |
52 |
Q |
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||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
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| T |
41901609 |
cttcaaatctttccaagcagaatttaataaattcttcgctaaatggcctctt |
41901660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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