View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_high_107 (Length: 220)

Name: NF13771_high_107
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_high_107
NF13771_high_107
[»] chr1 (2 HSPs)
chr1 (19-205)||(52174359-52174545)
chr1 (41-96)||(9069628-9069683)
[»] chr7 (13 HSPs)
chr7 (19-205)||(31608254-31608440)
chr7 (20-205)||(31614536-31614721)
chr7 (23-205)||(31595055-31595237)
chr7 (23-205)||(31575998-31576180)
chr7 (19-205)||(31604660-31604846)
chr7 (19-205)||(31618264-31618450)
chr7 (19-205)||(31532393-31532579)
chr7 (19-203)||(31541016-31541200)
chr7 (19-205)||(33305197-33305383)
chr7 (23-205)||(31572888-31573064)
chr7 (18-205)||(31585403-31585590)
chr7 (59-205)||(31439065-31439211)
chr7 (46-108)||(21898417-21898479)
[»] scaffold0394 (1 HSPs)
scaffold0394 (23-205)||(1940-2122)
[»] chr4 (1 HSPs)
chr4 (23-205)||(15063412-15063594)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 52174545 - 52174359
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52174545 acatgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 52174446  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52174445 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 52174359  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 9069628 - 9069683
Alignment:
Q  41 ttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcaga 96  Q
    |||||||||| ||||| |||||| || | |||||| ||||||||||||||||||||    
T  9069628 ttctttcttcctccaaccatttctagcaacaacattccataactgtatatatcaga 9069683  T

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Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 31608254 - 31608440
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    ||||||||| |||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  31608254 acatgacccgccagtgtcgtagttcttccttcctccaatcatttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccaccaaat 31608353  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||| || | ||||||||||| ||| ||||||||||| ||||||    
T  31608354 gctctactaaatacttctggcgccatatatcctatagttcctcgtgtccccaatattgacacaatactgtccttcctttgacatatt 31608440  T

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Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 31614536 - 31614721
Alignment:
Q  20 catgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatg 119  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| || |||||||    
T  31614536 catgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacattccataactatatacatcagatttgtaagaaactccgccaaatg 31614635  T
Q  120 ctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
    |||| ||| |||||||||| |||||||||||||||||||||||||| || | ||||||||||| |||||||||| |||||||||||    
T  31614636 ctctgctaaatacttctggtgccatatatcctatagttcctcttgtacctaatattgacacaatactatccttcttttggcatatt 31614721  T

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Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 31595055 - 31595237
Alignment:
Q  23 gaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctc 122  Q
    ||||||||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  31595055 gaccctccagtttgatagttctttcttcctccaatcatttcaagaatcaacataccataactgtatacatcagatttgtaagaaacaccaccaaatgctc 31595154  T
Q  123 tactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
    | ||| ||||||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||| ||| |||| ||||||    
T  31595155 tgctaaatacttctggcgccatatatcctatagttcctcttgtccccggtattgacacaatactatcattcatttgacatatt 31595237  T

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Target: chr7; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 31575998 - 31576180
Alignment:
Q  23 gaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctc 122  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||    
T  31575998 gaccctccagtgtcatagttcttccttcctccgatcatttcaagaatcaacatgccataactatatacatcagatttgtaagaaactccaccaaatgatc 31576097  T
Q  123 tactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
    || || || ||||||| |||||||||||||| ||||||||||  || | ||||||||||| |||||||||| |||||||||||    
T  31576098 tattaaatgcttctggtgccatatatcctattgttcctcttgcccctaatattgacacaatactatccttcttttggcatatt 31576180  T

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Target: chr7; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 31604660 - 31604846
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    ||||||||| |||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  31604660 acatgacccgccagtgtcgtagttcttccttcctccgatcatttcaagaatcaacatgccataactatatacatcagatttgtaagaaactccaccaaat 31604759  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
    | |||| || || ||||||| |||||||||||||| ||||||||||  || | ||||||||||| |||||||||| |||||||||||    
T  31604760 gatctattaaatgcttctggtgccatatatcctattgttcctcttgcccctaatattgacacaatactatccttcttttggcatatt 31604846  T

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Target: chr7; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 31618264 - 31618450
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    |||||||||||| ||||| |||||||| |||| ||| ||||||||||||||||||||||||||||| |||| ||||||| |||| ||||| ||||||||     
T  31618264 acatgaccctcccgtgtcgtagttcttccttcctccgatcatttcaagaatcaacatgccataactatatacatcagatctgtacgaaactccaccaaac 31618363  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
    ||||||||| ||| |||||| ||||| |||||||||||||||||||  || | ||||||||||| ||||||||||||||||||||||    
T  31618364 gctctactaaatatttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatatt 31618450  T

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Target: chr7; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 31532393 - 31532579
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||| ||||||||||||| |||||| |||| |||||| |||||| ||    
T  31532393 acatgaccctccagtgtcataattctttcttcctccaatcatttctagaattaacatcccataactgtatacatcagacttgtgagaaactccaccatat 31532492  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
    | || |||| | |||||||| || || |||||||| |||||||||||||||||||| ||||||| ||| || ||| |||||||||||    
T  31532493 gttcgactaaacacttctggtgctatgtatcctatggttcctcttgtgccaagtatagacacaatactgtcattcttttggcatatt 31532579  T

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Target: chr7; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 31541016 - 31541200
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    ||||||||||||||||||||| ||||||||||  |||| |||||| ||||| ||||| |||||||| |||| |||||| || | |||||| |||||| ||    
T  31541016 acatgaccctccagtgtcataattctttcttcccccaaccatttctagaattaacataccataactatatacatcagacttatgagaaactccaccatat 31541115  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcata 203  Q
    | ||  ||  |||||||||| || |||||||||||||||||||||||||||||||  ||||||| |||||| |||||||||||||    
T  31541116 gttcggctgaatacttctggtgctatatatcctatagttcctcttgtgccaagtaaagacacaatactatcattcctttggcata 31541200  T

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Target: chr7; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 33305383 - 33305197
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    |||||||||||| |||||||| ||||||||||  || |||||||| || || ||||| ||||||||||||| ||| || || | |||||| |||||||||    
T  33305383 acatgaccctcccgtgtcataattctttcttcccccgatcatttctagtattaacataccataactgtatacatcggacttatgagaaactccaccaaat 33305284  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
    | || |||| ||||||| || || || |||||||||||||||||||| |||||||| || ||||  |||||||||||||| ||||||    
T  33305283 gttcgactaaatacttccggtgctatgtatcctatagttcctcttgtaccaagtatggatacaatgctatccttcctttgacatatt 33305197  T

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Target: chr7; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 31573064 - 31572888
Alignment:
Q  23 gaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctc 122  Q
    |||||||| |||||||||||||||||||  ||||||||||| | ||| ||||| |||||      || |||||| |||| |||||| ||||||||  |||    
T  31573064 gaccctcctgtgtcatagttctttcttccaccaatcatttctaaaattaacataccata------tacatcagacttgtgagaaactccaccaaacactc 31572971  T
Q  123 tactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
    | ||| ||||||| || || || |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  31572970 tgctaaatacttcaggagctatgtatcctatagttccccttgtgccaagtatggacacaatactatccttcctttggcatatt 31572888  T

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Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 31585403 - 31585590
Alignment:
Q  18 cacatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaa 117  Q
    ||||||| ||||| ||||| |||||||| || | ||| || ||||| ||||||| |||||||||||| || | |||||| |||| |||||| ||||||||    
T  31585403 cacatgaacctcctgtgtcgtagttcttcctacctccgataatttctagaatcagcatgccataactatacacatcagacttgtgagaaactccaccaaa 31585502  T
Q  118 tgctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
     |||||| |  ||| |||||| |||||||||||||||||||||||||  || || |||||||||  |||||||||| || ||||||||    
T  31585503 ggctctaatgaatatttctggtgccatatatcctatagttcctcttgcccctagcattgacacagtactatccttctttcggcatatt 31585590  T

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Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 205
Target Start/End: Complemental strand, 31439211 - 31439065
Alignment:
Q  59 atttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctctactatatacttctggcgccatatatcctatagttc 158  Q
    ||||| ||| ||||||||||||||||||||| |||||| ||  ||||||| ||||||||||||| |||  |||| || || || ||  | ||||||||||    
T  31439211 atttcgagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgctcgactgaatacctcgggtgctatgaagcctatagttc 31439112  T
Q  159 ctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
    |||||||||||||||  || |||||||| || ||| |||| ||||||    
T  31439111 ctcttgtgccaagtagggaaacaacactctctttcttttgacatatt 31439065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 21898479 - 21898417
Alignment:
Q  46 tcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaac 108  Q
    ||||||||||||||| |||| ||||||||| |||||||| |||||||||||||| | ||||||    
T  21898479 tcttcttccaatcatgtcaataatcaacattccataactatatatatcagatttttcagaaac 21898417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 1940 - 2122
Alignment:
Q  23 gaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctc 122  Q
    ||||| ||||||||||| |||||| ||| |||  ||||||||||||||||||||||||||||||||| |||||| ||  |||||||  ||||||| ||||    
T  1940 gacccgccagtgtcataattcttttttcctccggtcatttcaagaatcaacatgccataactgtatacatcagacttagaagaaactgcaccaaaagctc 2039  T
Q  123 tactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
     |||| ||||||| || |  || || ||||||||||||||||| ||||| || ||||||||||| || ||| |||| ||||||    
T  2040 gactaaatacttccggtgatatgtagcctatagttcctcttgtcccaagcatggacacaacactctctttcttttgacatatt 2122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 15063594 - 15063412
Alignment:
Q  23 gaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctc 122  Q
    ||||| ||||||||||| |||||| ||| |||  ||||||||||||||||||||||||||||||||| |||||| ||  |||||||  ||||||| ||||    
T  15063594 gacccgccagtgtcataattcttttttcctccggtcatttcaagaatcaacatgccataactgtatacatcagacttagaagaaactgcaccaaaagctc 15063495  T
Q  123 tactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatt 205  Q
     |||| ||||||| || |  || || ||||||||||||||||| ||||| || ||||||||||| || ||| |||| ||||||    
T  15063494 gactaaatacttccggtgatatgtagcctatagttcctcttgtcccaagcatggacacaacactctctttcttttgacatatt 15063412  T

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