View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13771_high_111 (Length: 216)
Name: NF13771_high_111
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_111 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 7023177 - 7023358
Alignment:
| Q |
20 |
gaatttcgggtagggctggtattggtaaaacaactcttgctgaagaagtttaccgtagactacattctaaatacgacagttattgtttcatggctaatgt |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7023177 |
gaatttggggtagggctggtattggtaaaacaactcttgctgaagaagtttaccgtagactacattctaaatacgacagtttttgtttcatggctaatgt |
7023276 |
T |
|
| Q |
120 |
aagagaagaatcagaaagatctggcacaaacaatttgtcattaagaaaaaagcttttatccactctgttagaggaagaaaat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7023277 |
aagagaagaatcagaaagatctggcacaaacaatttgtcattaagaaaaaagcttttatccactctgttagaggaagaaaat |
7023358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 7036271 - 7036453
Alignment:
| Q |
16 |
cttggaatttcgggtagggctggtattggtaaaacaactcttgctgaagaagtttaccgtagactacattctaaatacgacagttattgtttcatggcta |
115 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||||||||| ||||||||||||| | |||||||||| |||||||||||| |||| || ||| ||||||| |
|
|
| T |
7036271 |
cttggaatttggggtatgcctggtattggtaaaacaactattgctgaagaagtatttcgtagactacgttctaaatacgaaagttgttattttatggcta |
7036370 |
T |
|
| Q |
116 |
atgtaagagaagaatcagaaagatctggcacaaacaatttgtcattaagaaaaaagcttttatccactctgttagaggaagaa |
198 |
Q |
| |
|
|||||||||||||||||||| ||| | | ||||||| |||| |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
7036371 |
atgtaagagaagaatcagaaggatgtagaacaaacagtttgaggctaagaaaaaatcttttatccactctattagaggaagaa |
7036453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 7075691 - 7075513
Alignment:
| Q |
16 |
cttggaatttcgggtagggctggtattggtaaaacaactcttgctgaagaagtttaccgtagactacattctaaatacgacagttattgtttcatggcta |
115 |
Q |
| |
|
|||||||||| ||||| | | |||||||||||||||||| ||||||||||||| | || ||||||| |||| |||| || | || |||||| ||||||| |
|
|
| T |
7075691 |
cttggaatttggggtatgccaggtattggtaaaacaactattgctgaagaagtatttcgaagactacgttctgaatatgaaacttgttgttttatggcta |
7075592 |
T |
|
| Q |
116 |
atgtaagagaagaatcagaaagatctggcacaaacaatttgtcattaagaaaaaagcttttatccactctgttagagga |
194 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
7075591 |
atgtaagagaagaatcagaaagatatggcacaaacagtttgaggttaagaaaaaagcttttatccactctattagagga |
7075513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 7030562 - 7030747
Alignment:
| Q |
16 |
cttggaatttcgggtagggctggtattggtaaaacaactcttgctgaagaagtttaccgtagactacattctaaatacgacagttattgtttcatggcta |
115 |
Q |
| |
|
|||||||||| ||||| | |||| ||||||||||||||| ||||||||||||| | |||||||||| |||||| ||||| |||| || ||| ||||||| |
|
|
| T |
7030562 |
cttggaatttggggtatgcctgggattggtaaaacaactattgctgaagaagtatttcgtagactacgttctaagtacgaaagttgttattttatggcta |
7030661 |
T |
|
| Q |
116 |
atgtaagagaagaatcagaaagatctggcacaaacaatttgtcattaagaaaaaagcttttatccactctgttagaggaagaaaat |
201 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||| |||||||||| |||||||||| || ||| ||||||||||| |
|
|
| T |
7030662 |
atgtaagagaagaatcagaaagatgtggaacaaacagtttgaggttaagaaaaattattttatccaccctattaaaggaagaaaat |
7030747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University