View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_112 (Length: 214)
Name: NF13771_high_112
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_112 |
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| [»] chr8 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 35919096 - 35919308
Alignment:
| Q |
1 |
cccaccctccaatccggttgtgaaggttctctgtcaggatagcttatacccttaatgtcgacgtttaggcacatggaaacttgctatcattatgtaatgt |
100 |
Q |
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| T |
35919096 |
cccacccaccaatcctgttgtgaaggttctctgtcatgatagcttatacccttaatgtcgacgcttaggcacatggaaacttgctatcattatgtaatgt |
35919195 |
T |
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| Q |
101 |
gcttgcaatatacaaactgaagtaggaatcaatcatttgcaagatgtaattaaacaacgtaatcatcgaattttaaaatttaaaaattagaccttcttca |
200 |
Q |
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| T |
35919196 |
gcttgcaatatac-aactgaagtaggaatcaatcatttgcaagatgtaattaaacaacgtaatcatcgaattttaaaatttaaaaactaaaccttcttca |
35919294 |
T |
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| Q |
201 |
tccctctatttttt |
214 |
Q |
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|||||||||||||| |
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| T |
35919295 |
tccctctatttttt |
35919308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 44690281 - 44690324
Alignment:
| Q |
143 |
gatgtaattaaacaacgtaatcatcgaattttaaaatttaaaaa |
186 |
Q |
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| T |
44690281 |
gatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaa |
44690324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 35919381 - 35919413
Alignment:
| Q |
168 |
gaattttaaaatttaaaaattagaccttcttca |
200 |
Q |
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| T |
35919381 |
gaattttaaaatttaaaaactagaccttcttca |
35919413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 28361048 - 28361106
Alignment:
| Q |
156 |
aacgtaatcatcgaattttaaaatttaaaaattagaccttcttcatccctctatttttt |
214 |
Q |
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| T |
28361048 |
aacgtaaacatcaaaatttaaaaattaaaaattagaccttcttcatccctctatttttt |
28361106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 32641355 - 32641412
Alignment:
| Q |
156 |
aacgtaatcatcgaattttaaaatttaaaaattagaccttcttcatccctctattttt |
213 |
Q |
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| T |
32641355 |
aacgtaaacatcaaaatttaaaatttaaaaactagaccttcttcatccctctattttt |
32641412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 34595559 - 34595501
Alignment:
| Q |
156 |
aacgtaatcatcgaattttaaaatttaaaaattagaccttcttcatccctctatttttt |
214 |
Q |
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||||||| |||| || ||||||||||||||| |||||||||||| ||| |||||||||| |
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| T |
34595559 |
aacgtaaacatcaaaatttaaaatttaaaaactagaccttcttcgtccttctatttttt |
34595501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 33551860 - 33551918
Alignment:
| Q |
156 |
aacgtaatcatcgaattttaaaatttaaaaattagaccttcttcatccctctatttttt |
214 |
Q |
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||||||| |||| || ||| ||||| ||||| |||||||||||||||||||||||||| |
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| T |
33551860 |
aacgtaaacatcaaaatttgaaattaaaaaaccagaccttcttcatccctctatttttt |
33551918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 31558246 - 31558284
Alignment:
| Q |
176 |
aaatttaaaaattagaccttcttcatccctctatttttt |
214 |
Q |
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| T |
31558246 |
aaatttaaaagctagaccttcttcatccctctatttttt |
31558284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 31559354 - 31559310
Alignment:
| Q |
143 |
gatgtaattaaacaacgtaatcatcgaattttaaaatttaaaaat |
187 |
Q |
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|||| ||||||| |||||||||||||||||| |||||||||||| |
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| T |
31559354 |
gatgaaattaaaacacgtaatcatcgaattttgaaatttaaaaat |
31559310 |
T |
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