View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13771_high_113 (Length: 213)
Name: NF13771_high_113
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_113 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 39307576 - 39307769
Alignment:
| Q |
1 |
ttgcaactgcaccttagttgaaccagaacaagaccaagatcttagtacttcaacccactctctacaaatctatcccaaatatccatcatcacattcttca |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||| |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
39307576 |
ttgcaactgcaccttagt------agaacaagaccaagatattagtaattcaaaacactctcaccaaaactataacaaatatccatcatcacattcttca |
39307669 |
T |
|
| Q |
101 |
ctcatgacatctacaacaattactggcacgatattcggataccgtaaaggaaaagtaagtttttgtattcaatccaactcaaattccacaaaccctattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39307670 |
ctcatgacatctacaacaattactggcacgatattcggataccgtaaaggaaaagtaagtttttgtattcaatccagctcaaattccacaaaccctattc |
39307769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 37494697 - 37494777
Alignment:
| Q |
94 |
ttcttcactcatgacatctacaacaattactggcacgatattcggataccgtaaaggaaaagtaagtttttgtattcaatc |
174 |
Q |
| |
|
||||||||||| |||| || || ||||| ||||| ||||| |||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
37494697 |
ttcttcactcacaccatccaccaccattacaggcacaatatttggataccgcaaaggaaaaataagtttttgcattcaatc |
37494777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University