View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_114 (Length: 209)
Name: NF13771_high_114
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_114 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 31277641 - 31277473
Alignment:
| Q |
18 |
aaaactaaccaagaggccaaccgagagaagcaagagcaaaaggcaaaggagcataagctgcaggggtagcaattgtagtagcaacatggaaagcagcgtg |
117 |
Q |
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| T |
31277641 |
aaaactaaccaagaggccaaccgagagaagcaagagcaaaaggcaaaggagcataagctgcaggggtagcaattgtagtagcaacatggaaagcagcgtg |
31277542 |
T |
|
| Q |
118 |
cttccatgttcctttaccactcactcctccttcttctgcatcttgttcttctatcccttcctcaactgttgacctttg |
195 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| |
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| T |
31277541 |
cttccatgttcctttaccactcactcctcct---------tctttttcttctatccctacctcaactgttgacctttg |
31277473 |
T |
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