View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13771_high_116 (Length: 206)
Name: NF13771_high_116
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_116 |
 | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 2939646 - 2939517
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2939646 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaacc-taactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
2939548 |
T |
|
| Q |
164 |
aattcaaaccctctcttcccctttcttctca |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2939547 |
aattcaaaccctctcttcccctttcttctca |
2939517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 33332389 - 33332512
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
33332389 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttaatcctaaattcatttaattgttgtgaaagggttaactca |
33332488 |
T |
|
| Q |
164 |
aattcaaaccctctcttccccttt |
187 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33332489 |
aattcaaaccctctcttccccttt |
33332512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 46014910 - 46015040
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
163 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||| |
|
|
| T |
46014910 |
ctcatgagaaaaacccagaattgattcacatgaatgttattcaaaccctaactttattttacttccaaattcttttaattgttgtgaaagggttgattca |
46015009 |
T |
|
| Q |
164 |
aattcaaaccctctcttcccctttcttctca |
194 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| |
|
|
| T |
46015010 |
aattcaaactctctcttcccctttcatctca |
46015040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 70885 - 71014
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
163 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
70885 |
ctcatgagaaaaatctagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
70984 |
T |
|
| Q |
164 |
aattcaaaccctctcttcccctttcttctc |
193 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
70985 |
aattcaaaccatctcttcccctttcttctc |
71014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 64 - 187
Target Start/End: Complemental strand, 45088099 - 45087976
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
163 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
45088099 |
ctcatgagaaaaattcagaattgactcacatgaatgttattcaaaccctaactttatttttctcccaaattcatttaattgttgtgaaagggttaactca |
45088000 |
T |
|
| Q |
164 |
aattcaaaccctctcttccccttt |
187 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
45087999 |
aatccaaaccctctcttccccttt |
45087976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 9312026 - 9311896
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
163 |
Q |
| |
|
||||||||||||| | |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
9312026 |
ctcatgagaaaaacctagaattcattcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaagggttaattca |
9311927 |
T |
|
| Q |
164 |
aattcaaaccctctcttcccctttcttctca |
194 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
9311926 |
aattcaaaccctctcttcccctttcatctca |
9311896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 14817696 - 14817573
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
163 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||| |
|
|
| T |
14817696 |
ctcatgagaaaaacccagaattgattcacatgaatgttattcaaaccctaa-tttattttactctcaaattcttttaattgttgtgaaagggttaattca |
14817598 |
T |
|
| Q |
164 |
aattcaaaccctctcttcccctttc |
188 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
14817597 |
aattcaaaccctctcttcccctttc |
14817573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 14828043 - 14828166
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
163 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||| |
|
|
| T |
14828043 |
ctcatgagaaaaacccagaattgattcacatgaatgttattcaaaccctaa-tttattttactctcaaattcttttaattgttgtgaaagggttaattca |
14828141 |
T |
|
| Q |
164 |
aattcaaaccctctcttcccctttc |
188 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
14828142 |
aattcaaaccctctcttcccctttc |
14828166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 13809632 - 13809755
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
163 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
13809632 |
ctcatgagaaaaacccagaattgattcacatgaatgttattcaaaccctaactttattt-actcccaaattcttttaattgttgtgaaagggttaattca |
13809730 |
T |
|
| Q |
164 |
aattcaaaccctctcttcccctttc |
188 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13809731 |
aattcaaaccctctcttcccctttc |
13809755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 7191001 - 7190897
Alignment:
| Q |
89 |
tcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactcaaattcaaaccctctcttcccctttc |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
7191001 |
tcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaagggttaactcaaattcaaactctctctt-ccctttc |
7190903 |
T |
|
| Q |
189 |
ttctca |
194 |
Q |
| |
|
|||||| |
|
|
| T |
7190902 |
ttctca |
7190897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 11039582 - 11039452
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
163 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |
|
|
| T |
11039582 |
ctcatgagaaaatcccagaattgattcacatgaatgttattcaaaccctaactttattttactcccaaattgttttaattgttgtgaaagggttaattca |
11039483 |
T |
|
| Q |
164 |
aattcaaaccctctcttcccctttcttctca |
194 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |
|
|
| T |
11039482 |
aattcaaaccctctcttctcctttcatctca |
11039452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 39991718 - 39991848
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
163 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| ||| |
|
|
| T |
39991718 |
ctcatgagaaaagcccagaattgattcacatgaatgttattcaaactgtaactttattttactcccaagttcttttaattgttgtgaaagggttaattca |
39991817 |
T |
|
| Q |
164 |
aattcaaaccctctcttcccctttcttctca |
194 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
39991818 |
aattcaaaccctctcttcccctttcatctca |
39991848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 17971000 - 17971128
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaactca |
163 |
Q |
| |
|
|||||||||||| |||||||||| |||||| || |||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| || |
|
|
| T |
17971000 |
ctcatgagaaaac-ccagaattgattcacatcaa-gttattcaaaccctaactttgttttactcccaaattcttttaatttttgtgaaagggttaaccca |
17971097 |
T |
|
| Q |
164 |
aattcaaaccctctcttcccctttcttctca |
194 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |
|
|
| T |
17971098 |
aattcaaaccctctcttcccctttgttctca |
17971128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 19718663 - 19718600
Alignment:
| Q |
131 |
aattcttttaattgttgtgaaatggttaactcaaattcaaaccctctcttcccctttcttctca |
194 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||| |
|
|
| T |
19718663 |
aattgttttaattgttgtgaaagggttaattcaagttcaaaccctctcttcccctttcatctca |
19718600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 37967514 - 37967468
Alignment:
| Q |
104 |
tcaaaccctaactttattttactcccaaattcttttaattgttgtga |
150 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37967514 |
tcaaaccctaactttattttactcccgaattcttttaattgttgtga |
37967468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 19718737 - 19718689
Alignment:
| Q |
64 |
ctcatgagaaaaatccagaattgactcacatgaatgttattcaaaccct |
112 |
Q |
| |
|
||||||||||||| ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
19718737 |
ctcatgagaaaaacccataattgattcacatgaatgttattcaaaccct |
19718689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University