View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_117 (Length: 204)
Name: NF13771_high_117
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_117 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 8155 - 8263
Alignment:
| Q |
82 |
cctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaa |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8155 |
cctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtaagagcatcatccattggcaa |
8254 |
T |
|
| Q |
182 |
tgaaggcaa |
190 |
Q |
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||||||||| |
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| T |
8255 |
tgaaggcaa |
8263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 583 - 478
Alignment:
| Q |
82 |
cctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaa |
181 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
583 |
cctcgtcagggattggatatttagaagcagagatgttgaagaaagattgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggcag |
484 |
T |
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| Q |
182 |
tgaagg |
187 |
Q |
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|||||| |
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| T |
483 |
tgaagg |
478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 31315542 - 31315434
Alignment:
| Q |
82 |
cctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaa |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31315542 |
cctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtaagagcatcatccattggcaa |
31315443 |
T |
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| Q |
182 |
tgaaggcaa |
190 |
Q |
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||||||||| |
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| T |
31315442 |
tgaaggcaa |
31315434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 31330671 - 31330566
Alignment:
| Q |
82 |
cctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaa |
181 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
31330671 |
cctcgtcagggattggatatttagaagcagagatgttgaagaaagattgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggcag |
31330572 |
T |
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| Q |
182 |
tgaagg |
187 |
Q |
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|||||| |
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|
| T |
31330571 |
tgaagg |
31330566 |
T |
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