View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_12 (Length: 577)
Name: NF13771_high_12
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Complemental strand, 53493862 - 53493310
Alignment:
| Q |
18 |
aaacaaatcaatccaaacaggctctaagtgtgcaatgtacatgtcccttttgcttttgttacaatcaatccaaacagtcttgcaaatttctcaccatgca |
117 |
Q |
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| T |
53493862 |
aaacaaatcaatccaaacaggctctaagtgtgcaatgtacatgtcccttttgcttttgttacaatcaatccaaacagtcttgcaaatttctcaccatgca |
53493763 |
T |
|
| Q |
118 |
agattaattacttttagagaacaagatgtgcactaccatgtcatagcatattgtcgtttgatgtacataaattatatccatcaatcataatcacatatcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53493762 |
agattaattacttttagagaacaagatgtgcactaccatgtcatagcatattgtcgtttgatgtacataaattatatccatcaatcataatcacatatcc |
53493663 |
T |
|
| Q |
218 |
aggtagtttaagtgggtgagatgaaaagatagaacaatcactacacttaatttttgaatggagagttgaacgtaatttgtcattccaacagcaagaatta |
317 |
Q |
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| T |
53493662 |
aggtagtttaagtgggtgagatgaaaagatagaacaatcactacacttaatttgtgaatggacagttgaacgtaatttgtcattccaacagcaagaatta |
53493563 |
T |
|
| Q |
318 |
tgttctttggtcttctaattcaaactctgcaatattaagagaattagaaatccaagtatagatagtcagacttaatacacttttattattattcttgata |
417 |
Q |
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| T |
53493562 |
tgttctttggtcttctaattcaaactctgcaatattaagagaattagaaatccaagtatagatagtcagacttaatacacttttattattattcttgata |
53493463 |
T |
|
| Q |
418 |
aaattgagaaaagagtgatcatttatatgattttatttagtgtctcgcgtactatagcttcaggaaactaagcaatacaatatttattgttctcccctag |
517 |
Q |
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| T |
53493462 |
aaattgagaaaagagtgatcatttatatgattttatttagtgtctcgcgtactatagcttcaggaaactaagcaatacaatatttattgttctcccctag |
53493363 |
T |
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| Q |
518 |
aaaatattttatattttgttctctatatctttgacgatatactctctctgctc |
570 |
Q |
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| T |
53493362 |
aaaatattttatattttgttctctatatctttgacgatatactctctctgctc |
53493310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 292 - 511
Target Start/End: Complemental strand, 16072748 - 16072530
Alignment:
| Q |
292 |
atttgtcattccaacagcaagaattatgttctttggtcttctaattcaaactctgcaatattaagagaattagaaatccaagtatagatagtcagactt- |
390 |
Q |
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||||||| ||||||| |||||||| || ||||||||||||| ||| ||||| ||||| | | ||||| |||||||||||||||||||||||||||| |
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| T |
16072748 |
atttgtctttccaaccacaagaattttgatctttggtcttctgatttaaactttgcaacactgagagagttagaaatccaagtatagatagtcagacaac |
16072649 |
T |
|
| Q |
391 |
-aatacacttttattattattcttgataaaattgagaaaagagtgatcatttatatgattttatttagtgtctcgcgtactatagcttcaggaaactaag |
489 |
Q |
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| T |
16072648 |
aaatacacctctactatt---ctcaataaaattgagaaaagagtgatcatttatatgattttatttagtgtctcatgtactatagcttcaggaaactaag |
16072552 |
T |
|
| Q |
490 |
caatacaatatttattgttctc |
511 |
Q |
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||||||| |||||||||||||| |
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| T |
16072551 |
caatacattatttattgttctc |
16072530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 16072911 - 16072813
Alignment:
| Q |
100 |
caaatttctcaccatgcaagattaattacttttagagaacaagatgtgcactaccatgtcatagcatattgtcgtttgatgtacataaattatatccat |
198 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||| | | ||||||||||||||||||||||| |||||||| ||| || ||||||||||| |
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| T |
16072911 |
caaacttctcaccatgcaagatcaattacttttaaggaaaataacgtgcactaccatgtcatagcataccgtcgtttgttgtggttagattatatccat |
16072813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 16072971 - 16072927
Alignment:
| Q |
25 |
tcaatccaaacaggctctaagtgtgcaatgtacatgtcccttttg |
69 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
16072971 |
tcaatccaaacaggtcctaagtgtgcaatgtacatatcccttttg |
16072927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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