View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_15 (Length: 526)
Name: NF13771_high_15
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 291 - 522
Target Start/End: Original strand, 28725385 - 28725612
Alignment:
| Q |
291 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagtaatcttattttctggtgaagatat |
390 |
Q |
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| T |
28725385 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagtaatcttattttctggtgaagat-- |
28725482 |
T |
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| Q |
391 |
atggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaacttaaatgtaagca |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28725483 |
--ggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaacttaaatgtaagca |
28725580 |
T |
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| Q |
491 |
ttgtctctatatttgtttagtttcttctcact |
522 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
28725581 |
ttgtctctatatttgtttagtttcttgtcact |
28725612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 28725095 - 28725292
Alignment:
| Q |
20 |
tatcccacatacacaaggatacaatgttttggtattgaagctaaagaaaatgaagaacgttttctttatggttcttgaaatattgagatgaagtaacatt |
119 |
Q |
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| T |
28725095 |
tatcccacatacacaaggatacaatgttttggtattgaagctaaccaaaatgaagaacgttttctttatggttcttgaaatattgagatgaagtaacatt |
28725194 |
T |
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| Q |
120 |
tctcaatatagattatctttcattttcatttgcttgacatgagaagaacaaggattaatcaaaaaacaaatgtaagtctttgtacaaagatctttgta |
217 |
Q |
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| T |
28725195 |
tctcaatatagattatctttcattttcatttgcttgacatgagaagaacaaggattaatcaaaaaacaaatgtaagtctttgtacaaagatctttgta |
28725292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 28727634 - 28727763
Alignment:
| Q |
72 |
aagaacgttttctttatggttcttgaaatattgagatgaagtaacatttctcaatatagattatctttcattttcatttgctt-gacatgagaagaacaa |
170 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||| |||||||||| ||| || ||||| ||||| |
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| T |
28727634 |
aagaatgttttctttatggttcttgagatattgagatgaagtgacatttctcagtatagattatcttcaattttcattttcttctacttgagagaaacaa |
28727733 |
T |
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| Q |
171 |
ggattaatcaaaaaacaaatgtaagtctttgt |
202 |
Q |
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| T |
28727734 |
ggattgatc--aaaacaaatgtaagtctttgt |
28727763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 291 - 428
Target Start/End: Original strand, 28727873 - 28728005
Alignment:
| Q |
291 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagt-aatcttattttctggtgaagata |
389 |
Q |
| |
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||||||| |||||| |||||||||||| |||||||| ||||||| |||||||||||||||| ||||| ||||| | |||||||||| ||| ||||||| |
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| T |
28727873 |
tcaggtgagtcaatcatcttcaactca--aactatctccaacatctttgaatggagacgatgattgtttaacaatttaatcttatttactgttgaagat- |
28727969 |
T |
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| Q |
390 |
tatggcttactttgtagaattaattgcttgcttctttta |
428 |
Q |
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|||||||||| ||||||||||| ||||||||||||| |
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| T |
28727970 |
---ggcttactttatagaattaattacttgcttctttta |
28728005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 28733846 - 28733923
Alignment:
| Q |
73 |
agaacgttttctttatggttcttgaaatattgagatgaagtaacatttctcaatatagattatctttcattttcattt |
150 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||| |||||| |||| |
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| T |
28733846 |
agaatgttttctttatggttcttgagatattgagatgaagtgacatttctcagtatagattatcttccattttgattt |
28733923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 291 - 428
Target Start/End: Original strand, 28734087 - 28734221
Alignment:
| Q |
291 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaa-gtaatcttattttctggtgaagata |
389 |
Q |
| |
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||||||| |||||| ||||||| |||| ||||||||||| ||| ||||||||||||||||| ||||| ||||| ||||||||||| ||| ||||| |
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| T |
28734087 |
tcaggtgagtcaatcatcttcagctca--aactatctacagcattattgaatggagacgatgattgtttaacaatttaatcttatttactgttgaag--- |
28734181 |
T |
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| Q |
390 |
tatggcttac--tttgtagaattaattgcttgcttctttta |
428 |
Q |
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||||||||| ||| ||||||||||| ||||||||||||| |
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| T |
28734182 |
-atggcttactttttatagaattaattacttgcttctttta |
28734221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 32280896 - 32280971
Alignment:
| Q |
109 |
gaagtaacatttctcaatatagattatctttcattttcatttgctt-gacatgagaagaacaaggattaatcaaaa |
183 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
32280896 |
gaagtaacatttcacaatatagattatctttcattttcatttgcttctacatgagaggaacaaggattaatcaaaa |
32280971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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