View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_19 (Length: 494)
Name: NF13771_high_19
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Original strand, 41777958 - 41778421
Alignment:
| Q |
19 |
ggttgacccacaggcgatgttttattgagatcccagtcccaaatcttcaacggattatcagttgatgcagaaaccagtgttttagagtcaagtgttgaac |
118 |
Q |
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| T |
41777958 |
ggttgacccacaggcgatgttttattgagatcccagtcccaaatcttcaacggattatcagttgatgcagaaaccagtgttttagagtcaagtgttgaac |
41778057 |
T |
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| Q |
119 |
atagcttacaactctttgatggcacccaaatcacaccagtgccttctaagattatgaagattgcgacaataggttaagtaatccatagaaccaagggtca |
218 |
Q |
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| T |
41778058 |
ataacttacaactctttgatggcacccaaatcacaccagtgccttctaagattatgaagattgcgacaataggttaagtaatccatagaaccaagggtca |
41778157 |
T |
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| Q |
219 |
acaaatgaaagcaatgagcaaagaaatgaacataatggtattattagcagcatttctaatggcttaaagtgtttctatgcaaagtgaagaaattatcatc |
318 |
Q |
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| T |
41778158 |
acaaatgaaagcaatgagcaaagaaatgaaaataatggtattattagcagcatttctaatggcttgaagtgtttcaatgcaaagtgaagaaattatcatc |
41778257 |
T |
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| Q |
319 |
tattttctttttgaagtagcttgagtttaagtgaaccgatcatgtgcaaatttatggtttgtactattatacatttttgcaaaacatagctcaaatagtt |
418 |
Q |
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| T |
41778258 |
tattttctttttgaagtagcttgagtttaagtgaaccgatcatgtgcaaatttatggtttgtactattatacatttttgcaaaacatagctcaaatagtt |
41778357 |
T |
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| Q |
419 |
taaccagatgcctttaaccatattattgtaaaaacaaaacctgaaccttcatacatttgatatt |
482 |
Q |
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| T |
41778358 |
taaacagatgcctttaaccatattattgtaaaaacaaaacctgaaccttcatacatttgatatt |
41778421 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 2309184 - 2309132
Alignment:
| Q |
55 |
tcccaaatcttcaacggattatcagttgatgcagaaaccagtgttttagagtc |
107 |
Q |
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||||| |||||||| | ||||||||| ||||||||||| ||||||| |||||| |
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| T |
2309184 |
tcccagatcttcaatgaattatcagtagatgcagaaacaagtgtttcagagtc |
2309132 |
T |
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