View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13771_high_21 (Length: 458)
Name: NF13771_high_21
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 405
Target Start/End: Complemental strand, 1519305 - 1518914
Alignment:
| Q |
14 |
cacttttttcagacgacatcatgtcacaatatgcaggcttgagaagtacaaatagagggaaggaggagaatgatttagtcttactgcatgcagttttgaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1519305 |
cacttttttcagacgacatcatgtcacaatatgcaggcttgagaagtacaaatagagggaaggaggagaatgatttagtcttactgcatgcagttttgaa |
1519206 |
T |
|
| Q |
114 |
gtatgtccttttctttcnnnnnnncttgacaaagtgtcttttaatagatatatagataattgcattgcatctatccataatgtcnnnnnnnnnnnnnnnc |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1519205 |
gtatgtccttttctttctttttttcttgacaaagtgtcttttaatagatatatagataattgcattgcatctatccataatgtctgtgtgtgtgtgtgtc |
1519106 |
T |
|
| Q |
214 |
tacgtatgttaccttccattttatgtcatttaatgaaaaacgattttgcatgnnnnnnnnnnnnngtaatctttataggttatgtaatcctctaacatac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1519105 |
tacgtatgttaccttccattttatgtcatttaatgaaaaacgattttgcatgtttttgcttttttgtaatctttataggttatgtaatcctctaacatac |
1519006 |
T |
|
| Q |
314 |
atagttcttttctattaaggcatggatatggaaagtggccagatatttttgatgataaggatctgaatatgttttctgtatgtcatttggtg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1519005 |
atagttcttttctattaaggcatggatatggaaagtggccagatattgttgatgataaggatctgaatatgttttctgtatgtcatttggtg |
1518914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 2911148 - 2910768
Alignment:
| Q |
14 |
cacttttttcagacgacatcatgtcacaatatgcaggcttgagaagtacaaatagagggaaggaggagaatgatttagtcttactgcatgcagttttgaa |
113 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||||||||||||||||||||| | | ||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
2911148 |
cacttttttcagatgacatcttgtcacgatatgcaggcttgagaagtacaaagatatggaaggaggagcatgatttagtcttgctgcatgcagttttgaa |
2911049 |
T |
|
| Q |
114 |
gtatgtccttttctttcnnnnnnncttgacaaagtgtcttttaatagatatatagataattgcattgcatctatccataatgtcnnnnnnnnnnnnnnn- |
212 |
Q |
| |
|
||||||| ||| | | |||||| |||||||||||||||||||| | ||||||||||||| | |||| |||||| |
|
|
| T |
2911048 |
gtatgtctctttttctttttcttttttgacatagtgtcttttaatagatata--ggcaattgcattgcatgtttccaaaatgtcgttgtgtatgtgtgtg |
2910951 |
T |
|
| Q |
213 |
-----ctacgtatgttaccttccattttatgtcatttaatgaaaaacgattttgcatgnnnnnnnnnnnnngtaatctttataggtt-----------at |
296 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||| ||||||||||||||||||||| ||||| |||||||||| || |
|
|
| T |
2910950 |
tgtgtctacgtatgtcaccctccattttatttcattcaatgaaaaacgattttgcatgtttttgcttttttgtaatttttataggttaattttatttaat |
2910851 |
T |
|
| Q |
297 |
gtaatcctctaacatacatagttcttttctattaaggcatggatatggaaagtggccagatatttttgatgataaggatctgaatat |
383 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
2910850 |
gtaatcctcta----acatagttcttttctattaaggcatggatatggaaagtggcatgatattgttgatgataaggatctgaatat |
2910768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University