View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13771_high_27 (Length: 426)
Name: NF13771_high_27
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 385
Target Start/End: Original strand, 17914746 - 17915131
Alignment:
| Q |
7 |
gaattggcggagaagaacatggctttcgatgttgtgtattatcctactgctgaaggttggtgtgattttgtagttaatgctaaggttgtggaggatgcca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17914746 |
gaattggcggagaagaacatggctttcgatgttgtgtattatcctactgctgaaggttggtgtgattttgtagttaatgctaaggttgtggaggatgcca |
17914845 |
T |
|
| Q |
107 |
tgaagaataaatggaattctggattgagaattaaacactctttgaagaaagacaattcttcaaagagatgctcaaattttgagggaacaatat---caat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
17914846 |
tgaagaataaatggaattctggattgagaattaaacactctttgaagaaagacaattcttcaaagagatgctcaaattttgagggaacaatatctgctct |
17914945 |
T |
|
| Q |
204 |
atctgctcctaatcgtccatggcgcatgcttgaggtatgtctt----tatatatgctattttcttttagtcttattatatctcaactgcacaatgttaca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17914946 |
atctgctcctaatcgtccatggcgcatgcttgaggtatgtctttatatatatatgctcttttcttttagtcttattatatctcaaccgcacaatgttaca |
17915045 |
T |
|
| Q |
300 |
tgtagtatttttgtttaatataggatatgttccaatgtgataatcttaaacattaatgtcatttttcatctcaacgtgataggtta |
385 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17915046 |
tatagtatttttgtttaatataggatatgttccaatgtgatcatcttaaacattaatgtcatttttcatctcaacgtgataggtta |
17915131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 17976422 - 17976185
Alignment:
| Q |
7 |
gaattggcggagaagaacatggctttcgatgttgtgtattatcctactgctgaaggttggtgtgattttgtagttaatgctaaggttgtggaggatgcca |
106 |
Q |
| |
|
||||||||||| |||||| ||||||| || |||||||||||||| || ||| ||||||||||| ||||||| ||| |||| || |||||||||||||| | |
|
|
| T |
17976422 |
gaattggcggataagaacttggcttttgaagttgtgtattatccaacggctaaaggttggtgtaattttgttgttgatgccaaagttgtggaggatgcaa |
17976323 |
T |
|
| Q |
107 |
tgaagaataaatggaattctggattgagaattaaacactctttgaagaaagacaattcttcaaagagatgctcaaattttgagggaacaatat---caat |
203 |
Q |
| |
|
|||| | || |||| | |||| |||||||| ||| |||| |||||| || |||||||||||||||||||||| |||||||||||||||| | | |
|
|
| T |
17976322 |
tgaatattagttggagtcttggagtgagaattgaactttcttcgaagaattacgattcttcaaagagatgctcaaaatttgagggaacaatatctgctct |
17976223 |
T |
|
| Q |
204 |
atctgctcctaatcgtccatggcgcatgcttgaggtat |
241 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
17976222 |
atctgctcctaattgtccatggcggatgcttgaggtat |
17976185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 25225441 - 25225544
Alignment:
| Q |
7 |
gaattggcggagaagaacatggctttcgatgttgtgtattatcctactgctgaaggttggtgtgattttgtagttaatgctaaggttgtggaggatgcca |
106 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||| || ||| |||||| |||||||||| || |||||||| ||| || ||||||| |
|
|
| T |
25225441 |
gaattggcggagaagaacacagcatttgatgttgtgtattatccgacagctagtggttggcgtgattttgtggtggatgctaagactgttgacgatgcca |
25225540 |
T |
|
| Q |
107 |
tgaa |
110 |
Q |
| |
|
|||| |
|
|
| T |
25225541 |
tgaa |
25225544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 25289597 - 25289700
Alignment:
| Q |
7 |
gaattggcggagaagaacatggctttcgatgttgtgtattatcctactgctgaaggttggtgtgattttgtagttaatgctaaggttgtggaggatgcca |
106 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||| || ||| |||||| |||||||||| || |||||||| ||| || ||||||| |
|
|
| T |
25289597 |
gaattggcggagaagaacacagcatttgatgttgtgtattatccgacagctagtggttggcgtgattttgtggtggatgctaagactgttgacgatgcca |
25289696 |
T |
|
| Q |
107 |
tgaa |
110 |
Q |
| |
|
|||| |
|
|
| T |
25289697 |
tgaa |
25289700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 25727807 - 25727704
Alignment:
| Q |
7 |
gaattggcggagaagaacatggctttcgatgttgtgtattatcctactgctgaaggttggtgtgattttgtagttaatgctaaggttgtggaggatgcca |
106 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||| || ||| |||||| |||||||||| || |||||||| ||| || ||||||| |
|
|
| T |
25727807 |
gaattggcggagaagaacacagcatttgatgttgtgtattatccgacagctagtggttggcgtgattttgtggtggatgctaagactgttgacgatgcca |
25727708 |
T |
|
| Q |
107 |
tgaa |
110 |
Q |
| |
|
|||| |
|
|
| T |
25727707 |
tgaa |
25727704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 8823698 - 8823932
Alignment:
| Q |
10 |
ttggcggagaagaacatggctttcgatgttgtgtattatcctactgctgaaggttggtgtgattttgtagttaatgctaaggttgtggaggatgccatga |
109 |
Q |
| |
|
|||||| | |||||||| ||||| || |||| |||| ||||||| | |||||| | ||||||||||| || |||| |||||||| |||||||| |||| |
|
|
| T |
8823698 |
ttggcgaataagaacatcgcttttgaagttgagtatcatcctacggttgaagggttttgtgattttgtggtggatgccaaggttgttgaggatgcaatga |
8823797 |
T |
|
| Q |
110 |
agaataaatggaattctggattgagaattaaacactctttgaagaaagacaattcttcaaagagatgctcaaattttgagggaacaatat---caatatc |
206 |
Q |
| |
|
||| ||| ||||||| |||| ||| ||||||| ||||||||||| || |||||||||||||||| ||| |||| |||| ||||||| | | || |
|
|
| T |
8823798 |
agattaactggaattgtggaatgaaaattaaattttctttgaagaatgaggattcttcaaagagatggtcagtttttaagggtacaatatccgctctctc |
8823897 |
T |
|
| Q |
207 |
tgctcctaatcgtccatggcgcatgcttgaggtat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8823898 |
agctcctaatcgtccatggcgcatgcttgaggtat |
8823932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University