View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_29 (Length: 414)
Name: NF13771_high_29
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 30819189 - 30818803
Alignment:
| Q |
18 |
acttcggtctaaattagcgtttacaatctacaacttattaatactactgtctaaattagaccattgcacttaaatcgtactgagaggggctttgatctaa |
117 |
Q |
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| T |
30819189 |
acttcggtctaaattagcgtttacaatctacaacttattaatactactgtctaaattagaccattacacttaaatcgtaccgagaggggctttgatctaa |
30819090 |
T |
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| Q |
118 |
attagaccactacacttgaatcgtaccgtgagggacttgccacaaccttgattactctaatttttaaacatatgattgatacagttccacgagctacaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30819089 |
attagaccactacacttgaatcgtaccgtgagggacttgccacaaccttgattactctaatttttaaacatatgattgatacagttccacgagctacaaa |
30818990 |
T |
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| Q |
218 |
ctctagagaactagttcatgaagtgtcgaaagtacttaattttctttcagtagtaatctatgtcactttcaaagtacttacaaacataaaacttatttga |
317 |
Q |
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| T |
30818989 |
ctctagagaactagtttatgaagtgtcgaaagtacttaattttatttccgtagtaatctatgtcactttcaaagtacttacaaacataaaatttatttga |
30818890 |
T |
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| Q |
318 |
taataatgatttaattttcaggtttggtagccctttatttctattttcatcttttgttaaggaagatttgtggtcctctaatctctg |
404 |
Q |
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| T |
30818889 |
taataatgatttaattttcaggtttggtagccttgaatttctattttcatctttcgttaaggaagatttgtggtcctctaatctctg |
30818803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 158 - 404
Target Start/End: Complemental strand, 31655149 - 31654923
Alignment:
| Q |
158 |
cacaaccttgattactctaatttttaaacatatgattgatacagttccacgagctacaaactctagagaactagttcatgaagtgtcgaaagtacttaat |
257 |
Q |
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| T |
31655149 |
cacaaccttgattactctaattattaaacatatgattgat------ccacgagctacaaactccagagaactagttcatgaagtgtcgaaagta------ |
31655062 |
T |
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| Q |
258 |
tttctttcagtagtaatctatgtcactttcaaa-gtacttacaaacataaaacttatttgataataatgatttaattttcaggtttggtagccctttatt |
356 |
Q |
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| T |
31655061 |
---------gcagtaatctatgtcactttcaaaagtacttacaaatataaaatttatttgataataatgatataatttttagctttggtagccctgaatt |
31654971 |
T |
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| Q |
357 |
tctattttcatcttttgttaaggaagatttgtggtcctctaatctctg |
404 |
Q |
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| T |
31654970 |
tctattttcgtcttttgttaaggaagatttgtgatcgtctaatctctg |
31654923 |
T |
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