View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_3 (Length: 720)
Name: NF13771_high_3
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 584; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 17 - 620
Target Start/End: Original strand, 40459917 - 40460519
Alignment:
| Q |
17 |
aaaggaatcactcccctaggcattgggataacttccaacacaacagactgatcaacaacagctgaaacactagtgttgttaaacagagacactatagcat |
116 |
Q |
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| T |
40459917 |
aaaggaatcactcccctaggcattgggataa-ttccaacacaacagactgatcaacaacagctgaaacactagtgttgttaaacagagacactatagcat |
40460015 |
T |
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| Q |
117 |
agtagaaatttaataaatcacttttgttcaatggtaagctagttaatacaaatgtgttctgaaaatgcctgctataacgacactacaccattgtagtggt |
216 |
Q |
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| T |
40460016 |
agtagaaatttaataaatcacttttgttcaatggtaagctagttaatacaaatgtgttctgaaaatgcctgctataacgacactacaccattgtagtggt |
40460115 |
T |
|
| Q |
217 |
ggaaacaaatcgacatttacttgggggcaaggtctttaggatgttttggatcacaatcttttcacattattttgtctatgtatatgcttctgttgattaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40460116 |
ggaaacaaatcgacatttacttgggggcaaggtctttaggatgttttggatcacaatcttttcacatttttttgtctatgtatatgcttctgttgattaa |
40460215 |
T |
|
| Q |
317 |
ttatttcgatttatgtttcacatttttaacaatgtagttaaaattgataatggaaacatcatccgtctttcctctaatgatttatgctgccaaaaaattt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40460216 |
ttatttcgatttatgtttcacatttttaacaatgtagttaaaattgataatggaaacatcatccgtctttcctctaatgatttatgctgccaaaaaattt |
40460315 |
T |
|
| Q |
417 |
ccaattgggtacagttattttactttgacaatcagaacttgaaagacagttcctagtgtatcttggtaacttttgtttgctgtagataaaaagaaaaatt |
516 |
Q |
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| T |
40460316 |
ccaattgggtacagtcattttactttgacaaccagaacttgaaagacagttcctagtgtatcttggtaacttttgtttgctgtagataaaaagaaaaatt |
40460415 |
T |
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| Q |
517 |
ataatgtaatgctttggaaatttgattgatttgtgagagtttatagttgacaccgtgaaaaaatcgaatacttttaaatgtgtttggatgttgttttatg |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40460416 |
ataatgtaatgctttggaaatttgattgatttgtgagagtttatagttgacaccgtgaaaaaatcgaatacttttaaatgtgtttggatgttgttttatg |
40460515 |
T |
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| Q |
617 |
gtat |
620 |
Q |
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|||| |
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| T |
40460516 |
gtat |
40460519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 634 - 720
Target Start/End: Original strand, 40460547 - 40460630
Alignment:
| Q |
634 |
tttatgggttaacttttgggattgttcttaaaattgtgtgtggaagaggagagtttgacttacttattagtatatcgtttacttacc |
720 |
Q |
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| T |
40460547 |
tttatgggttaacttttgggattgttcttaaaattttgtgtggaagaggagagtttgacttac---ttagtatatcgtttacttacc |
40460630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 40437896 - 40437937
Alignment:
| Q |
338 |
atttttaacaatgtagttaaaattgataatggaaacatcatc |
379 |
Q |
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| T |
40437896 |
atttttaataatgttgttaaaattgataatggaaacatcatc |
40437937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 25457111 - 25457070
Alignment:
| Q |
338 |
atttttaacaatgtagttaaaattgataatggaaacatcatc |
379 |
Q |
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| T |
25457111 |
atttttaataatgttgttaaaattgataatggaaacatcatc |
25457070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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