View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_high_4 (Length: 705)

Name: NF13771_high_4
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_high_4
NF13771_high_4
[»] chr7 (2 HSPs)
chr7 (20-693)||(33110108-33110781)
chr7 (335-406)||(38846223-38846294)
[»] chr8 (4 HSPs)
chr8 (114-514)||(33221785-33222186)
chr8 (351-456)||(18551482-18551587)
chr8 (332-405)||(613273-613346)
chr8 (332-405)||(619667-619740)
[»] chr3 (1 HSPs)
chr3 (116-218)||(42778181-42778283)
[»] chr1 (2 HSPs)
chr1 (357-456)||(9802725-9802824)
chr1 (335-406)||(47706302-47706373)
[»] scaffold1416 (1 HSPs)
scaffold1416 (356-407)||(176-227)
[»] chr6 (4 HSPs)
chr6 (356-407)||(6343504-6343555)
chr6 (332-406)||(14816080-14816154)
chr6 (333-406)||(28518623-28518696)
chr6 (365-413)||(15514410-15514458)
[»] chr5 (1 HSPs)
chr5 (356-407)||(16989768-16989819)
[»] chr2 (2 HSPs)
chr2 (356-407)||(20482603-20482654)
chr2 (356-407)||(28018533-28018584)
[»] chr4 (1 HSPs)
chr4 (354-450)||(8122072-8122168)


Alignment Details
Target: chr7 (Bit Score: 617; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 20 - 693
Target Start/End: Original strand, 33110108 - 33110781
Alignment:
Q  20 gtaagtccattttatatcccttatcttcttttatgtcctatcactttttgtcttcttctcacaaacactttgtctttgctatttcacactagtctgaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110108 gtaagtccattttatatcccttatcttcttttatgtcctatcactttttgtcttcttctcacaaacactttgtctttgctatttcacactagtctgaaac 33110207  T
Q  120 ttggattttgactgatttgcctgctggtaaggtacctattagttgcagatgggtctacaaaatcaaatatcatgttaatggttcaatagaacaatacaag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110208 ttggattttgactgatttgcctgctggtaaggtacctattagttgcagatgggtctacaaaatcaaatatcatgttaatggttcaatagaacaatacaag 33110307  T
Q  220 gctcggttggcagcagagggttacactcaacaagaaggagtgaattattttgatacttttaatcctgttacaaaactcactaatgcgtttgttacttgct 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33110308 gctcggttggcagcagagggttacactcaacaagaaggagtgaattattttgatacttttaatcctgttacaaaactcactaatgcgcttgttacttgct 33110407  T
Q  320 ttagctgctacacataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110408 ttagctgctacacataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctg 33110507  T
Q  420 gtgttcattcttccaaaccaaatcaagtttgtaaactactttaaacctctttatggtttgaaataaggcaagctgcaatggctctccaaattatcctcnn 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  33110508 gtgttcattcttccaaaccaaatcaagtttgtaaactactttaaacctctttatggtttgaaataaggcaagctgcaatggctctccaaattatcctctt 33110607  T
Q  520 nnnnnctattggattcactcaatcccaatctgattattcattgttcactnnnnnnnncctctactctttcacaactctattggtatatgttgatgatgtt 619  Q
         ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||||||||||||||||||    
T  33110608 tttttctattggattcactcaatcccaatctgattattcattgttcactaaaaaaaacctctactctttcacaactctgttggtatatgttgatgatgtt 33110707  T
Q  620 attctcacatgaacatccatttcagatatccactctgttaaacttggtccttacttcttccgctcttcatctca 693  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33110708 attctcacatgaacatccatttcagatatccactctgttaaacttggtccttacttctcccgctcttcatctca 33110781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 406
Target Start/End: Complemental strand, 38846294 - 38846223
Alignment:
Q  335 aattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatg 406  Q
    ||||||||||| ||  |||| ||||||||||||||||| || ||||| || ||| | |||||||||||||||    
T  38846294 aattggcatcttcatcaacttgatgtcaataatgcttttctgcatggggatcttcaagaagatgtgtacatg 38846223  T

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Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 114 - 514
Target Start/End: Original strand, 33221785 - 33222186
Alignment:
Q  114 tgaaacttggattttgactgatttgcctgctggtaaggtacctattagttgcagatgggtctacaaaatcaaatatcatgttaatggttcaatagaacaa 213  Q
    ||||||||||||||||| |||| |||||| |||||| ||||||||| |||| |||||||| |||||||||||||| |||| |||||| || |||||||||    
T  33221785 tgaaacttggattttgaatgatgtgcctgatggtaaagtacctattggttgaagatgggtttacaaaatcaaataccatgctaatggctccatagaacaa 33221884  T
Q  214 tacaaggctcggttggcagcagagggttacactcaacaagaaggagtgaattattttgatacttttaatcctgttacaaaactcacta--atgcgtttgt 311  Q
    ||||||||| | ||||   || |||| |||||||  |||||| ||||||| |||||||| ||||||| || |||  ||||||| ||||   || ||||||    
T  33221885 tacaaggcttgtttggtgtcaaagggctacactctgcaagaatgagtgaactattttgacacttttagtcatgtagcaaaacttactattgtgtgtttgt 33221984  T
Q  312 tacttgctttagctgctacacataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagct 411  Q
    | ||||| |||| ||||||||||||||||||||||||| || || ||||||| ||||| ||  ||||||||||||||||| | |||||   |||||||||    
T  33221985 tgcttgcattagatgctacacataattggcatctccaacaattgaatgtcaaaaatgcatttattcatggagaccttgataaggatgtaagcatgaagct 33222084  T
Q  412 tcatcctggtgttcattcttccaaaccaaatcaagtttgtaaactactttaaacctctttatggtttgaaataaggcaagctgcaatggctctccaaatt 511  Q
    || |||| |||||   |||| |||||| |||||||||| |||| | | | ||| ||||||| |||||||| |||| ||| |  |||||| | ||||||||    
T  33222085 tcctcctagtgtttcatctttcaaacctaatcaagtttctaaattgc-tcaaatctctttagggtttgaagtaagccaaccaccaatggttttccaaatt 33222183  T
Q  512 atc 514  Q
    |||    
T  33222184 atc 33222186  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 351 - 456
Target Start/End: Complemental strand, 18551587 - 18551482
Alignment:
Q  351 aactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttg 450  Q
    |||| |||||||||||||||||||||||||| ||  |  | ||| ||||||||||| | |||| ||| |||||| | || ||||||||||||||||||||    
T  18551587 aacttgatgtcaataatgctttccttcatggtgaattgcaagaaaatgtgtacatgcaacttcctccaggtgttaaatcatccaaaccaaatcaagtttg 18551488  T
Q  451 taaact 456  Q
    ||||||    
T  18551487 taaact 18551482  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 613273 - 613346
Alignment:
Q  332 cataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacat 405  Q
    |||||||||||| | ||  |||| ||||| |||||||| ||||||||||| || ||| | ||||||||||||||    
T  613273 cataattggcatttacatcaacttgatgtaaataatgccttccttcatggtgaacttcaggaagatgtgtacat 613346  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 619667 - 619740
Alignment:
Q  332 cataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacat 405  Q
    |||||||||||| | ||  |||| ||||| |||||||| ||||||||||| || ||| | ||||||||||||||    
T  619667 cataattggcatttacatcaacttgatgtaaataatgccttccttcatggtgaacttcaggaagatgtgtacat 619740  T

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Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 42778283 - 42778181
Alignment:
Q  116 aaacttggattttgactgatttgcctgctggtaaggtacctattagttgcagatgggtctacaaaatcaaatatcatgttaatggttcaatagaacaata 215  Q
    |||||||||||||||  ||||||||| ||||||||||| |||||||||| |||| | | ||||| |||||||| ||||||||| ||||||||||||| ||    
T  42778283 aaacttggattttgagagatttgccttctggtaaggtatctattagttgtagatagatttacaagatcaaataccatgttaatagttcaatagaacatta 42778184  T
Q  216 caa 218  Q
    |||    
T  42778183 caa 42778181  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 357 - 456
Target Start/End: Complemental strand, 9802824 - 9802725
Alignment:
Q  357 atgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaact 456  Q
    |||||||||||||||| |||||||| ||| |  | ||| ||||||||||| | |||| ||| |||||| |  | |||||||||||||||||||| |||||    
T  9802824 atgtcaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtaacttcctccaggtgttaaaacatccaaaccaaatcaagtttgcaaact 9802725  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 406
Target Start/End: Complemental strand, 47706373 - 47706302
Alignment:
Q  335 aattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatg 406  Q
    ||||||||||| ||  |||| ||||||||||||||||| || ||||| || ||| | |||||||||||||||    
T  47706373 aattggcatcttcatcaacttgatgtcaataatgcttttctgcatggggatcttcaagaagatgtgtacatg 47706302  T

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Target: scaffold1416 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 227 - 176
Alignment:
Q  356 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 407  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  227 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 176  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 6343504 - 6343555
Alignment:
Q  356 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 407  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  6343504 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 6343555  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 332 - 406
Target Start/End: Original strand, 14816080 - 14816154
Alignment:
Q  332 cataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatg 406  Q
    |||||||||||| | ||  |||| |||||||||||||| || |||||||| || ||| | |||||||||||||||    
T  14816080 cataattggcatttacatcaacttgatgtcaataatgcctttcttcatggtgaacttcaggaagatgtgtacatg 14816154  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 406
Target Start/End: Complemental strand, 28518696 - 28518623
Alignment:
Q  333 ataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatg 406  Q
    ||||||||||||| ||  |||| ||||||||||||||||| || ||||  || ||| | |||||||||||||||    
T  28518696 ataattggcatcttcaccaactagatgtcaataatgcttttctgcatgaggatcttcaagaagatgtgtacatg 28518623  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 15514458 - 15514410
Alignment:
Q  365 aatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttc 413  Q
    ||||||||||| |||||||||||||||||||| || || ||||| ||||    
T  15514458 aatgctttcctacatggagaccttgatgaagaagtatatatgaatcttc 15514410  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 16989819 - 16989768
Alignment:
Q  356 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 407  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  16989819 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 16989768  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 20482654 - 20482603
Alignment:
Q  356 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 407  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  20482654 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 20482603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 28018533 - 28018584
Alignment:
Q  356 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 407  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  28018533 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 28018584  T

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Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 354 - 450
Target Start/End: Complemental strand, 8122168 - 8122072
Alignment:
Q  354 tggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttg 450  Q
    ||||||| || ||||| || ||||||||||| ||| |||||||||| |||||||   ||| ||| ||||||  | |||| |||||||| ||||||||    
T  8122168 tggatgtaaacaatgcctttcttcatggagatcttcatgaagatgtttacatgaccattcctccaggtgtttctacttcaaaaccaaaccaagtttg 8122072  T

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