View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_42 (Length: 366)
Name: NF13771_high_42
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 9197025 - 9197371
Alignment:
| Q |
1 |
aaaagtggtgacgattagagtctcgaaaggagaggagagagaagagtatcaatatatttcttgatgatatgattgtttcaagggatgattgttattatta |
100 |
Q |
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| T |
9197025 |
aaaagtggtgactattagggtctcgaaaggagaggagagagaagagtatcaatatattacttgatgatatgtttgtttcaagggatgattgttattatta |
9197124 |
T |
|
| Q |
101 |
gcttagaattgattttatttttgagattatttgtagaaaggtatgtgtagaaatacaagtttcannnnnnnngttagtagtttctttttaaatagacaaa |
200 |
Q |
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| T |
9197125 |
gctcaaaattgattttatttttgagattatttgtagaaaagtatgcgtagaaatacaagtttcattttttttgttagtagtttctttttaaatagacaaa |
9197224 |
T |
|
| Q |
201 |
ataacaatagtcattaaaatccttttnnnnnnnncaatagttattaaagattcacatttaattacaaaaatcggagttcaaaccataatcacaacgtcta |
300 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9197225 |
ataacaatagtcattaaagtccttttaaaaaaaa-aatagttattaaagattcacatttaagtacaaaaatcggagttcaaaccataatcacaacgtcta |
9197323 |
T |
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| Q |
301 |
atataaactattttgacattttattaatcgagttagaacctgcatatt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9197324 |
atataaactattttgacattttattaatcgagttagaacctgcatatt |
9197371 |
T |
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