View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_48 (Length: 355)
Name: NF13771_high_48
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_48 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 39055640 - 39055961
Alignment:
| Q |
19 |
atgtaaaccgttagactgtagtgtacttgaagaatcagacttttctattggccagaatgcaaatggaacaacacaaaatgatgatcgtgcatttccgaaa |
118 |
Q |
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| T |
39055640 |
atgtaaaccgttagactgtagtgtacttgaagaatcagacttttctattggccagaatgcaaatggaacaacacaaaatgatgatcgtgcatttccaaaa |
39055739 |
T |
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| Q |
119 |
cgtacacaacaagaacagttggaaaactggcagaaaaataggaggacacttgtaagttcatttctatcaagtcgtggtcactgttatatttattacaatt |
218 |
Q |
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| T |
39055740 |
cgtacacaacaagaacagttggaaaactggcagaaaaataggaggacacttgtaagttcatttctatcaagtcgtggtcactgttatatttattacaatt |
39055839 |
T |
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| Q |
219 |
actgtgacaatatgtaattatgaatattgacactctatgatcaattgagtttctctttttagtgtattgtaatttgtaaatgtgaatgtataaatgacac |
318 |
Q |
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| T |
39055840 |
actgtgacaatatgtaattatgaatattgacactctatgatcaattgagtttctctttttagtgtattgtaatttgtaaatgtgaatgtataaatgacac |
39055939 |
T |
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| Q |
319 |
aggcttattctaccgttggtac |
340 |
Q |
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| T |
39055940 |
aggcttattctaccgttggtac |
39055961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 30393723 - 30393618
Alignment:
| Q |
71 |
cagaatgcaaatggaacaacacaaaatgatgatcgtgcatttccgaaacgtacacaacaagaacagttggaaaactggcagaaaaataggaggacacttg |
170 |
Q |
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| T |
30393723 |
cagaatgtgaatggatctacacagaatgaggagcgttcagctccaaaacgcacacaacaagaacaactgcaaaactggcaaaagaacaggaggacgcttg |
30393624 |
T |
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| Q |
171 |
taagtt |
176 |
Q |
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|||||| |
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| T |
30393623 |
taagtt |
30393618 |
T |
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