View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_high_49 (Length: 346)

Name: NF13771_high_49
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_high_49
NF13771_high_49
[»] chr7 (11 HSPs)
chr7 (8-152)||(41901575-41901719)
chr7 (197-330)||(41896364-41896497)
chr7 (67-160)||(41896534-41896627)
chr7 (67-160)||(41891796-41891889)
chr7 (67-151)||(41829067-41829151)
chr7 (67-151)||(41885561-41885645)
chr7 (67-119)||(34453750-34453802)
chr7 (240-323)||(41891556-41891644)
chr7 (233-300)||(41901409-41901476)
chr7 (235-315)||(34453949-34454032)
chr7 (275-315)||(41829293-41829333)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 41901719 - 41901575
Alignment:
Q  8 atacttgaatgaattttaattaatgactattaattagtcgtaaatttggtgcagcttttaagaggccatttagcgaagaatttatgaaattctgcctgga 107  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  41901719 atacttgaatgaattttaattaatgactattaattagtcggaaatttggtgcagtttttaagaggccatttagcgaagaatttattaaattctgcttgga 41901620  T
Q  108 aagatttgaagtgggactctggtcttctgcaatggagtcagtaac 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41901619 aagatttgaagtgggactctggtcttctgcaatggagtcagtaac 41901575  T

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Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 197 - 330
Target Start/End: Complemental strand, 41896497 - 41896364
Alignment:
Q  197 cttacactgtatcccttctgttacactaaatgcagacataatgttgatggtgctttagcatgtgctattggcgattcgaaaaacaagctactatttgttt 296  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41896497 cttacactgtatcccttttgttacactaaatgcagacataatgttgatggtgctttagcatgtgctattggcgattcgaaaaacaagctactatttgttt 41896398  T
Q  297 gggtacatttacttgaagtcgtttatgctgtttc 330  Q
    ||||||||||||||||||||||||||| ||||||    
T  41896397 gggtacatttacttgaagtcgtttatgttgtttc 41896364  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 41896627 - 41896534
Alignment:
Q  67 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaacactcttct 160  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  41896627 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagtgggggtttggtcttctgcaatggagtcagtaacactcttct 41896534  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 41891889 - 41891796
Alignment:
Q  67 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaacactcttct 160  Q
    ||||| |||||||  ||||||||||||||||||||| | ||||||||||||||||| ||||||||||||  |   |||| ||||||||||||||    
T  41891889 aagagaccatttactgaagaatttatgaaattctgcttagaaagatttgaagtgggcctctggtcttctagatccgagttagtaacactcttct 41891796  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 41829067 - 41829151
Alignment:
Q  67 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaa 151  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||  | ||| ||||||||| | |||||||||    
T  41829067 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa 41829151  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 41885645 - 41885561
Alignment:
Q  67 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaa 151  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||  | ||| ||||||||| | |||||||||    
T  41885645 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa 41885561  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 34453750 - 34453802
Alignment:
Q  67 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagt 119  Q
    |||||||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  34453750 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagt 34453802  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 41891644 - 41891556
Alignment:
Q  240 ttgatggtgctttagcatgtgctattggcgattcgaaaaacaagctactatttgtttgggt-----acatttacttgaagtcgtttatg 323  Q
    ||||||||||||||| ||||| ||| || ||||||||||||||||| |||||||||||| |     ||||||||||||||||| |||||    
T  41891644 ttgatggtgctttagaatgtgttatgggagattcgaaaaacaagctgctatttgtttggctgcataacatttacttgaagtcgattatg 41891556  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 41901476 - 41901409
Alignment:
Q  233 cataatgttgatggtgctttagcatgtgctattggcgattcgaaaaacaagctactatttgtttgggt 300  Q
    |||||| |||||| ||||||||| ||||| || || || | |||||||||||||||||||||||||||    
T  41901476 cataatattgatgatgctttagcctgtgccatcggagaattgaaaaacaagctactatttgtttgggt 41901409  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 34453949 - 34454032
Alignment:
Q  235 taatgttgatggtgctttagcatgtgctattggcgat---tcgaaaaacaagctactatttgtttgggtacatttacttgaagt 315  Q
    ||||||||| ||||||||| | | ||||||||| ||    || ||||| ||||| |||||||||||||||||||| ||||||||    
T  34453949 taatgttgacggtgctttaacttttgctattggagaagaatccaaaaataagctgctatttgtttgggtacattttcttgaagt 34454032  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 41829293 - 41829333
Alignment:
Q  275 aaaaacaagctactatttgtttgggtacatttacttgaagt 315  Q
    ||||| ||||| |||||||||||||||||||| ||||||||    
T  41829293 aaaaataagctgctatttgtttgggtacattttcttgaagt 41829333  T

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