View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_5 (Length: 669)
Name: NF13771_high_5
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 594; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 9 - 654
Target Start/End: Original strand, 22278120 - 22278765
Alignment:
| Q |
9 |
gacatcatcacgaatcctcacgatatctttccaccaactcgaccctcccagactcccctccttcacccacccactttatacttcgtacctcgccacagac |
108 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22278120 |
gacatcatcacgaatcctcacgatatccttccaccaactcgaccctcccagacccccctccttcacccacccactttatacttcgtacctcgccacagac |
22278219 |
T |
|
| Q |
109 |
gtacaatacaacaatcaccctgatccaccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcctcctta |
208 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22278220 |
gtacaatacaacaatccccctgatccaccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcctcctta |
22278319 |
T |
|
| Q |
209 |
ctcaaacaaacataatctgaataaacccagaaagtttatctatattcctcacccccaccccaaaaaagacaacataaaatagaattgatagcggaaatga |
308 |
Q |
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||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
22278320 |
ctcaaacaaacataatctgaataaacctagaaaatttacctatattcctcacccccaccccaaaaaagacaacataaaatagaatcgatagaggaaatga |
22278419 |
T |
|
| Q |
309 |
tacctgaagaggctttgaagaagtaaatagcataaacatgaagagatgatggtacatacttcaacgcacaatttcatctttaatttctagccaaaagtct |
408 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22278420 |
tacctgaagaggctttgaagaagtagatagcataaacatgaaaagatgatggtacatacttcaacgcacaatttcatcttttatttctagccaaaagtct |
22278519 |
T |
|
| Q |
409 |
ttgaaaaaactaaaatttataccatccagaccagaactcttaaaacagtcccagatctccactttaacttcctcgaaattgaatagtttaatcaagacac |
508 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22278520 |
ttgaaaaaactaaaatttataccatccggaccagaactcttaaaacagtcccagatctccactttaacttcctcgaaattgaatagtttaatcaagacat |
22278619 |
T |
|
| Q |
509 |
gagacaaactacgaaaatgtaaatcatccaccacatgtctgatctcattcctagccttaaaatgttcaaagacaacactacgcacgtcagacgccccctc |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22278620 |
gagacaaactacgaaaatgtaaatcatccaccacatgtctgatctcattcctagccttaaaatgttcaaagacaacactacgcacgtcagacgccccctc |
22278719 |
T |
|
| Q |
609 |
cacctgaacactgtcaactataacaaaagatggattatgtcctctc |
654 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22278720 |
cacctgaacactgtcaactataacaaaagatggattatgtcctctc |
22278765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 7287299 - 7287375
Alignment:
| Q |
131 |
atccaccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcctcctt |
207 |
Q |
| |
|
|||| |||||| |||||||| || | || || |||||| |||| ||||| || |||||||| ||||||||||||||| |
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|
| T |
7287299 |
atccgccaacaccattttcctaataatgaaatattaaattcacataaccgccgcacccccaaacctccttcctcctt |
7287375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 7287967 - 7288043
Alignment:
| Q |
131 |
atccaccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcctcctt |
207 |
Q |
| |
|
|||| |||||| |||||||| || | || || |||||| |||| ||||| || |||||||| ||||||||||||||| |
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| T |
7287967 |
atccgccaacaccattttcctaataatgaaatattaaattcacataaccgccgcacccccaaacctccttcctcctt |
7288043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 21089945 - 21089887
Alignment:
| Q |
296 |
atagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
354 |
Q |
| |
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|||| ||||||||||||||||| | |||||||||| |||||||||||| | ||||||| |
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| T |
21089945 |
atagaggaaatgatacctgaagggaatttgaagaaggaaatagcataaataggaagaga |
21089887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 17829460 - 17829525
Alignment:
| Q |
283 |
taaaatagaattgatagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatg |
348 |
Q |
| |
|
||||| ||||| ||||| ||| ||||||||||| | |||||||||||| ||||||||||| |||| |
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|
| T |
17829460 |
taaaaaagaatcgatagaggagatgatacctgagggagctttgaagaagaaaatagcataatcatg |
17829525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 380706 - 380758
Alignment:
| Q |
302 |
gaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
354 |
Q |
| |
|
|||||||||||||| || |||||||||||| ||| |||||| ||||| ||||| |
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|
| T |
380706 |
gaaatgatacctgatgaagctttgaagaaggaaagagcatagacatgcagaga |
380758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 331
Target Start/End: Complemental strand, 41352634 - 41352565
Alignment:
| Q |
262 |
cccaccccaaaaaagacaacataaaatagaattgatagcggaaatgatacctgaagaggctttgaagaag |
331 |
Q |
| |
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||||||| |||| | || |||||||||||||| |||| |||||||||| |||| | ||||||||||||| |
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| T |
41352634 |
cccaccctaaaagaaacgacataaaatagaatcaatagaggaaatgatatctgacggggctttgaagaag |
41352565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 51072196 - 51072127
Alignment:
| Q |
134 |
caccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcct |
203 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||||||||| || | || ||| ||||||| ||||||||||| |
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| T |
51072196 |
caccaacaccatttccctaacagagcaacattaaactccctcatcctcctgacccccaaacctccttcct |
51072127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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