View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_51 (Length: 339)
Name: NF13771_high_51
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_51 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 2609566 - 2609266
Alignment:
| Q |
1 |
ttgtcgcttgcaaacttgtttcttccttgcttccgtctgcgtcagttactattgacaaaaatgaaacagcaaaaattagaactatataagacttatgttg |
100 |
Q |
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| T |
2609566 |
ttgtcacttgcaaacttgtttcttccttgcttccatctgcgtcagttactattgacaaaaatgaaacagcaaaatttagaactatataagacttatgttg |
2609467 |
T |
|
| Q |
101 |
gttttactttcattatcatgtattgataaataaaatagattgctgttattgatcttgtagattgtgtattagaccagtaaatttgtaacatcacagaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2609466 |
gttttactttcattatcatgtattgataaataaaatagattgctgttattgatcttgtagattgtgtattggaccagtaaatttgtaacatcacagaaaa |
2609367 |
T |
|
| Q |
201 |
atttattctactaatttgtataagagttacagtatctccagtagtccatttaannnnnnnnnnnnnnnccataatttccctcccttatgttaaatatgaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2609366 |
atttattctactaatttgtataagagttacagtatctccagtagtccatttaatatttatttatttttccataatttccctcccttatgttaaatatgaa |
2609267 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
2609266 |
t |
2609266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 2609253 - 2609216
Alignment:
| Q |
287 |
atgttaaatatgaatccttgtagtcaagatttgattct |
324 |
Q |
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||||||||||||||| |||||||||||||||||||||| |
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| T |
2609253 |
atgttaaatatgaatacttgtagtcaagatttgattct |
2609216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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