View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13771_high_52 (Length: 337)
Name: NF13771_high_52
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_52 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 12899670 - 12899963
Alignment:
| Q |
17 |
caaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12899670 |
caaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattagt |
12899769 |
T |
|
| Q |
117 |
ccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttct |
216 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12899770 |
ctttcattgtgatataaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaacaatttct |
12899869 |
T |
|
| Q |
217 |
ggtacctctaataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtatgttttaaattcttgaatctttcattg |
310 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
12899870 |
ggtacctctcataagaatactagcacaattggaataaaaggaacagttggttatgctcctccgggtatgttttaaattcttgaatcttccattg |
12899963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 12932379 - 12932672
Alignment:
| Q |
17 |
caaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| | |
|
|
| T |
12932379 |
caaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattgcattaccttcatcgagaatgtgagcagttaat |
12932478 |
T |
|
| Q |
117 |
ccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttct |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932479 |
ccttcattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttcc |
12932578 |
T |
|
| Q |
217 |
ggtacctctaataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtatgttttaaattcttgaatctttcattg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12932579 |
ggtacctctaataagaatactagcacaatcggagtaaaaggaacagttggttatgctccaccgggtatgttttaaattcttgaatcttccattg |
12932672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 12958182 - 12958471
Alignment:
| Q |
21 |
tcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtcctt |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
12958182 |
tcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcagttaatcctt |
12958281 |
T |
|
| Q |
121 |
cattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttctggta |
220 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
12958282 |
cactgtgatctaaagccaagcaatgtccttcttgatggtgacatggttgctcatgtgagtgattttggaatagcaagacttgtctcaaccatttccggta |
12958381 |
T |
|
| Q |
221 |
cctctaataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtatgttttaaattcttgaatctttcattg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
12958382 |
cctctaataagaatactagcacaattggaataaaaggaacagttggttatgctcctccgggtatgttttaaattcttgaatcttccattg |
12958471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 12907290 - 12907583
Alignment:
| Q |
17 |
caaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
12907290 |
caaatcctccaacaacattgaaccttggtcttagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcagttaat |
12907389 |
T |
|
| Q |
117 |
ccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttct |
216 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12907390 |
cctccattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatttgagtgattttggcatagcaagacttgtctcaaccatttct |
12907489 |
T |
|
| Q |
217 |
ggtacctctaataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtatgttttaaattcttgaatctttcattg |
310 |
Q |
| |
|
||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
12907490 |
ggtacctctcataagaatactagcataatcggaataaaaggaacagttggttatgctccaccgggtatgttttaaattctttaatcttccattg |
12907583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 12948744 - 12949037
Alignment:
| Q |
17 |
caaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
12948744 |
caaatcctccaacaacattgaaccttcgtcgtagattaaacatcattatcgatgttgcttctgcattacattatcttcatcgataatgtgagcaattagt |
12948843 |
T |
|
| Q |
117 |
ccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttct |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12948844 |
ccttcattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttcc |
12948943 |
T |
|
| Q |
217 |
ggtacctctaataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtatgttttaaattcttgaatctttcattg |
310 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
12948944 |
agtacctctaataagaatactagtacaattggaataaaaggaacagttggttatgctccaccgggtacgttttacattcttgaatcttccattg |
12949037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 7393 - 7686
Alignment:
| Q |
17 |
caaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagt |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | |
|
|
| T |
7393 |
caaatcctccaataacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattaacttcatcgagaatgtgagcaattaat |
7492 |
T |
|
| Q |
117 |
ccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7493 |
acttcattgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttct |
7592 |
T |
|
| Q |
217 |
ggtacctctaataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtatgttttaaattcttgaatctttcattg |
310 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7593 |
ggtacgtctaataagaatactagcacaatcggaataaaaggaacagctggttatgctccaccgggtatgttttaaattcttgaatcttccattg |
7686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 17923512 - 17923225
Alignment:
| Q |
17 |
caaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| | |
|
|
| T |
17923512 |
caaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattgcattaccttcatcgagaatgtgagcagttaat |
17923413 |
T |
|
| Q |
117 |
ccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttct |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17923412 |
ccttcattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttcc |
17923313 |
T |
|
| Q |
217 |
ggtacctctaataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtatgttttaaattcttgaatctt |
304 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17923312 |
ggtacctctaataagaatactagtacgatcggaataaaaggaacagttggttatgctccatcgggtatgttttaaattcttgaatctt |
17923225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 10604857 - 10605139
Alignment:
| Q |
22 |
cctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttc |
121 |
Q |
| |
|
||||||||||| ||| |||||||| | ||||| |||||||| | ||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||| |
|
|
| T |
10604857 |
cctccaacaacgttggaccttggtaaaagatttaacatcatttttgatgttgcttctgcattgcattatcttcatcaagaatgtgagcaattagtcattc |
10604956 |
T |
|
| Q |
122 |
attgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttctggtac |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
10604957 |
attgtgatctaaagccaagcaatgtcctacttgatgatgatatggttgctcatgtgagtgattttggcatagcaagactggtctcgtccattggtggtac |
10605056 |
T |
|
| Q |
222 |
ctctaataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtatgttttaaattcttgaatctt |
304 |
Q |
| |
|
|||| ||| |||||||| |||||||| ||||||||||| ||||| |||||||| || |||||||| |||||||||||||||| |
|
|
| T |
10605057 |
ctctcatataaatactagtacaattgggataaaaggaactgttggatatgctcctccaggtatgttctaaattcttgaatctt |
10605139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 299
Target Start/End: Original strand, 10581108 - 10581378
Alignment:
| Q |
22 |
cctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttc |
121 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
10581108 |
cctctaacaacattgaaccttggtcatagattaaacatcattatggatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttc |
10581207 |
T |
|
| Q |
122 |
attgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttctggtac |
221 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |||||| |||||| |
|
|
| T |
10581208 |
gttgtgatctaaagccaagca---cacttcttgatgatgacatgg----tcatgtgagtgattttggcacagcaagacttgtctcagccatttgtggtac |
10581300 |
T |
|
| Q |
222 |
ctctaataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtatgttttaaattcttga |
299 |
Q |
| |
|
| || ||||||||||||| |||| |||||||||||||||| |||| |||||||| | |||||||||||||||| |||| |
|
|
| T |
10581301 |
cactcataagaatactagtacaactggaataaaaggaacaattggctatgctcctctgggtatgttttaaattattga |
10581378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 284
Target Start/End: Complemental strand, 10740801 - 10740541
Alignment:
| Q |
24 |
tccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcat |
123 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||||||| | |||||| || ||||||||||||||||||| | ||||||||| | ||| ||||||||| |
|
|
| T |
10740801 |
tccaagaacattggaccttggtcatagattaaacatcatgaacgatgtcgccactgcattacattatcttcaccaagaatgtgaacaattggtccttcat |
10740702 |
T |
|
| Q |
124 |
tgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttctggtacct |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
10740701 |
tgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcagccattgacgatacct |
10740602 |
T |
|
| Q |
224 |
ctaataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtat |
284 |
Q |
| |
|
|| | ||| | ||||| |||||||||||||||||||| ||||| |||||||| || ||||| |
|
|
| T |
10740601 |
ctcacaaggaaactagtacaattggaataaaaggaactgttggctatgctcctccaggtat |
10740541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 29 - 305
Target Start/End: Original strand, 10611822 - 10612098
Alignment:
| Q |
29 |
caacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcattgtga |
128 |
Q |
| |
|
|||||||| |||| || |||||||||||||||| || ||||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
10611822 |
caacattggacctcagtcatagattaaacatcattatggatgttggttctgcattacattatcttcataatgaatgtgagcaattggtccttcattgtga |
10611921 |
T |
|
| Q |
129 |
tctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttctggtacctctaat |
228 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||| || |
|
|
| T |
10611922 |
tataaagccaagcaatgtcctacttgatgatgatatggttgcacatgtgagtgattttggcatagcaagacttgtctcggccattggtggttcctctcat |
10612021 |
T |
|
| Q |
229 |
aagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtatgttttaaattcttgaatcttt |
305 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || ||||| |||||||| || |||||||| ||||||| |||| |||| |
|
|
| T |
10612022 |
aagaatactaagacaattggaattaaagggactgttggctatgctcctccaggtatgttctaaattcatgaaccttt |
10612098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 10763236 - 10762975
Alignment:
| Q |
23 |
ctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttca |
122 |
Q |
| |
|
|||||||||||||| | |||| | | ||| | || ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
10763236 |
ctccaacaacattggatcttgatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttca |
10763137 |
T |
|
| Q |
123 |
ttgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaa-ccatttctggtac |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||| ||||| || |||| |
|
|
| T |
10763136 |
ttgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggaatagcaagactagt-tcaagccattgcttgtac |
10763038 |
T |
|
| Q |
222 |
ctctaataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtat |
284 |
Q |
| |
|
|||| |||| | ||||| |||| ||||||||||||||| ||||| |||||||| || ||||| |
|
|
| T |
10763037 |
ctctcttaaggaaactagtacaactggaataaaaggaactgttggctatgctcctccaggtat |
10762975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 10565135 - 10565414
Alignment:
| Q |
25 |
ccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcatt |
124 |
Q |
| |
|
|||||||||||| || ||| | |||||||| |||| || ||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||| |
|
|
| T |
10565135 |
ccaacaacattggactttgctcatagattatacattattatcgatgttgcttctgcattacattatcttcatagagaatgtgaagaattggtcattcatt |
10565234 |
T |
|
| Q |
125 |
gtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttctggtacctc |
224 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||| |
|
|
| T |
10565235 |
gtgatctaaagccaagcaatatccttcttgacgatgacatggttgctcatgtgagtgattttggcatagcaagactcgtctcagctattggcagtacctc |
10565334 |
T |
|
| Q |
225 |
taataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgggtatgttttaaattcttgaatctt |
304 |
Q |
| |
|
| |||| ||||| || ||||||| | | ||||||||||| || ||| |||| || |||||||||||||| |||||||||| |
|
|
| T |
10565335 |
ttataaaaatacaagtacaattgaagttaaaggaacagtaggctattctcctcctggtatgttttaaatgcttgaatctt |
10565414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 10216851 - 10216650
Alignment:
| Q |
24 |
tccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcat |
123 |
Q |
| |
|
||||| ||||||| |||||||| |||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||| ||| | ||||| |
|
|
| T |
10216851 |
tccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttcggcattacattatctgcatcaagaatgtgagcaattgattattcat |
10216752 |
T |
|
| Q |
124 |
tgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttctggtacct |
223 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
10216751 |
tgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgagtgattttggcatagcaacatttgtctcaaccattggtggtacct |
10216652 |
T |
|
| Q |
224 |
ct |
225 |
Q |
| |
|
|| |
|
|
| T |
10216651 |
ct |
10216650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 10717042 - 10716860
Alignment:
| Q |
24 |
tccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcat |
123 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||||||| |||||||| || ||||||||||||||||||| | ||||||||| | |||| || ||||| |
|
|
| T |
10717042 |
tccaagaacattggaccttggtcatagattaaacatcatgatcgatgtcgccactgcattacattatcttcaccaagaatgtgaacaattaatcattcat |
10716943 |
T |
|
| Q |
124 |
tgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctc |
206 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
10716942 |
tgtgatcttaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctc |
10716860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 58 - 286
Target Start/End: Original strand, 10559043 - 10559271
Alignment:
| Q |
58 |
atcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatg |
157 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10559043 |
atcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatg |
10559142 |
T |
|
| Q |
158 |
atgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttctggtacctctaataagaatactagcacaattggaataaaagg |
257 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||| |||||| | |||| ||| |||| | ||||||||||||||||||||||| |
|
|
| T |
10559143 |
aagacaatgttgctcatgtgagtgattttggcatagcaagactcgtctcatctgcggacggtatatctcctaaggaaactagcacaattggaataaaagg |
10559242 |
T |
|
| Q |
258 |
aacagttggttatgctccaccgggtatgt |
286 |
Q |
| |
|
|| ||||| |||||||| || ||||||| |
|
|
| T |
10559243 |
gactgttggctatgctcctccaggtatgt |
10559271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 10747092 - 10746934
Alignment:
| Q |
49 |
agattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtcc |
148 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||||| ||||||| |||| |||||||| |||||||||||||||| |
|
|
| T |
10747092 |
agattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaagcaatgtcc |
10746993 |
T |
|
| Q |
149 |
ttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctca |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
10746992 |
ttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctca |
10746934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 11048759 - 11048576
Alignment:
| Q |
24 |
tccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcat |
123 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| ||| | ||||| |
|
|
| T |
11048759 |
tccaaaaacattggaccttggtgataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcat |
11048660 |
T |
|
| Q |
124 |
tgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctca |
207 |
Q |
| |
|
||||||||||||||||| ||||| |||||| | || ||| |||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
11048659 |
tgtgatctaaagccaagtaatgttcttcttaacgacgacatggttgctcatgtgagtgattttggcattgcaaaacttgtctca |
11048576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 10588532 - 10588349
Alignment:
| Q |
24 |
tccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcat |
123 |
Q |
| |
|
||||| ||| ||| |||||| | |||||||||| |||| |||||| ||||||||||| ||||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
10588532 |
tccaagaacgttggaccttgttcatagattaaatatcactatcgatattgcttctgcactacattatcttcatcatgaatgtgagcaggtggtccttcat |
10588433 |
T |
|
| Q |
124 |
tgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctca |
207 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10588432 |
tgtgatataaagccaagcaacgtccttcttgacgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctca |
10588349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 10652257 - 10652053
Alignment:
| Q |
71 |
ttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgc |
170 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||||| | ||| |||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
10652257 |
ttgcttctgtattacattaccttcatcatgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttcttgatgacgacatggttgc |
10652158 |
T |
|
| Q |
171 |
tcatgtgagtgattttggcatagcaagacttgtctcaaccatttctggtacctctaataagaatactagcacaattggaataaaaggaacagttggttat |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| | ||||| ||||||||||| ||||| || ||||| ||| |
|
|
| T |
10652157 |
tcatgtgagtgattttggcatagcaagacttgtctcagccattgacaatacctctaacaaggaaactagtacaattggaattaaagggactgttggctat |
10652058 |
T |
|
| Q |
271 |
gctcc |
275 |
Q |
| |
|
||||| |
|
|
| T |
10652057 |
gctcc |
10652053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 81 - 284
Target Start/End: Complemental strand, 10660130 - 10659927
Alignment:
| Q |
81 |
attacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagt |
180 |
Q |
| |
|
||||||||| ||||||| |||||||||| | ||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
10660130 |
attacattaccttcatcacgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttcttgacgatgacatggttgctcatgtgagt |
10660031 |
T |
|
| Q |
181 |
gattttggcatagcaagacttgtctcaaccatttctggtacctctaataagaatactagcacaattggaataaaaggaacagttggttatgctccaccgg |
280 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | ||||||| | ||| | ||| ||||||||||| ||||| || ||||| |||||||| || | |
|
|
| T |
10660030 |
gattttggcatagcaagacttgtctcagccattgacgatacctctcacaaggaatttagtacaattggaattaaagggactgttggctatgctcctccag |
10659931 |
T |
|
| Q |
281 |
gtat |
284 |
Q |
| |
|
|||| |
|
|
| T |
10659930 |
gtat |
10659927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 7193169 - 7193295
Alignment:
| Q |
81 |
attacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagt |
180 |
Q |
| |
|
||||||||| ||||||| |||||||||| || || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
7193169 |
attacattaccttcatcttgaatgtgagcaatcgatcattcattgtgatctaaagccaagcaatgtccttcttgacgatgacatggttgctcatgtgagt |
7193268 |
T |
|
| Q |
181 |
gattttggcatagcaagacttgtctca |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
7193269 |
gattttggcatagcaagacttgtctca |
7193295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 30 - 244
Target Start/End: Complemental strand, 9836424 - 9836210
Alignment:
| Q |
30 |
aacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcattgtgat |
129 |
Q |
| |
|
|||||||||||||| | | ||| |||| ||| ||| ||| |||||||||||||||||||||||||| | |||||||||| | | ||| ||||||||||| |
|
|
| T |
9836424 |
aacattgaaccttgttcaaagactaaatatctccattgatattgcttctgcattacattatcttcattgtgaatgtgagcaagtggtcattcattgtgat |
9836325 |
T |
|
| Q |
130 |
ctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttctggtacctctaata |
229 |
Q |
| |
|
| ||||||||||| ||||||| |||||| || |||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||| |
|
|
| T |
9836324 |
atcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcagccattgacggtacctctcata |
9836225 |
T |
|
| Q |
230 |
agaatactagcacaa |
244 |
Q |
| |
|
|| | ||||| |||| |
|
|
| T |
9836224 |
aggaaactagtacaa |
9836210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 65 - 203
Target Start/End: Complemental strand, 19605926 - 19605788
Alignment:
| Q |
65 |
tcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacct |
164 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| || || | |
|
|
| T |
19605926 |
tcgatgtttcttctgcattacattaccttcatcatgaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgacgacgatat |
19605827 |
T |
|
| Q |
165 |
ggttgctcatgtgagtgattttggcatagcaagacttgt |
203 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19605826 |
cgttgcacatgtgagtgattttggcatagcaagacttgt |
19605788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 9825258 - 9825374
Alignment:
| Q |
91 |
cttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggca |
190 |
Q |
| |
|
|||||||| || ||||||| |||| |||||||||||||| |||||||||| ||| ||||| ||||||| || | ||| |||| | |||||||||||||| |
|
|
| T |
9825258 |
cttcatcgtgattgtgagcaattaatccttcattgtgatataaagccaagtaatatccttgttgatgaagatattgtttctcaggcgagtgattttggca |
9825357 |
T |
|
| Q |
191 |
tagcaagacttgtctca |
207 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
9825358 |
ttgcaagacttgtctca |
9825374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 10746921 - 10746839
Alignment:
| Q |
232 |
aatactagcacaattggaataaaaggaacagttggttatgctccaccggg----tatgttttaaattcttgaatctttcattg |
310 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||| || || |||||| ||||||||||| |||| ||||| |
|
|
| T |
10746921 |
aatactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtcttccattg |
10746839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 35376658 - 35376701
Alignment:
| Q |
119 |
ttcattgtgatctaaagccaagcaatgtccttcttgatgatgac |
162 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
35376658 |
ttcattgtgatgttaagccaagcaatgttcttcttgatgatgac |
35376701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 39875899 - 39875809
Alignment:
| Q |
119 |
ttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaac |
209 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
39875899 |
ttcattgtgatttaaaaccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcttagccagacttgtttcaac |
39875809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 39884022 - 39883932
Alignment:
| Q |
119 |
ttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaac |
209 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
39884022 |
ttcattgtgatttaaaaccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcttagccagacttgtttcaac |
39883932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 39890976 - 39890886
Alignment:
| Q |
119 |
ttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagacttgtctcaac |
209 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
39890976 |
ttcattgtgatttaaaaccaagcaatgtccttcttgaagatgacatggttgctcatgtgagtgattttggcttagccagacttgtttcaac |
39890886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 31467218 - 31467092
Alignment:
| Q |
70 |
gttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttg |
169 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||| ||| | ||| ||||||||||| ||||||| ||||| || |||||||||||| |||| | |
|
|
| T |
31467218 |
gttgcttcggcatttcattatcttcatcatgaatgtcagcaacctgtcattcattgtgatttaaagcctagcaacgttcttcttgatgattctatggtag |
31467119 |
T |
|
| Q |
170 |
ctcatgtgagtgattttggcatagcaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
31467118 |
ctcatgtgagtgattttggcatagcaa |
31467092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 28605825 - 28605907
Alignment:
| Q |
119 |
ttcattgtgatctaaagccaagcaatgtccttcttgatgatgacctggttgctcatgtgagtgattttggcatagcaagactt |
201 |
Q |
| |
|
||||||||||| |||||||||||||| | |||||| || ||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28605825 |
ttcattgtgatttaaagccaagcaatattcttcttcataatgacatggttgctcatgtgagtgattttggacaagcaagactt |
28605907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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