View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_53 (Length: 334)
Name: NF13771_high_53
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 49230034 - 49229767
Alignment:
| Q |
10 |
acatcatcatacatgcaattatttctatatttgaccggacaaattggaataggtgaaaatcatatctataatactagtacccttaaaaaataatatcaca |
109 |
Q |
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| T |
49230034 |
acatcaacatacatgcaattatttctatatttgactggacaaattggaataggtgaaaatcatatctataatactagtacccttaaaaaataatatcaca |
49229935 |
T |
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| Q |
110 |
ccattaatacctttcttatgtttgtatgcttttttgaatcaacggcatttgttaaaaatgagtattttctttttaaatataggtgcaaattaaacgaact |
209 |
Q |
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| T |
49229934 |
ccattaatacctttcttatgtttgtatgcttttttgaatcaacggcatttgttaaaaatgagtattttctttttaaatataggtgcaaattaaacgaact |
49229835 |
T |
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| Q |
210 |
ttgcaaaggtctaactaaaaccggatgttaag--------attggatattttatgtggtatttaattt |
269 |
Q |
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| T |
49229834 |
ttgcaaaggtctaactaaaaccggatgttaagattgttagattggatattttatgtggtatttaattt |
49229767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 49229650 - 49229594
Alignment:
| Q |
263 |
ttaatttcatgttaaatttgtgtttttccattttgtgtgaagggagtttgtaatttc |
319 |
Q |
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| T |
49229650 |
ttaatttcatgttaaatttgtgtttttccattttgtgtgaagggagtttgtaatttc |
49229594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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