View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_54 (Length: 331)
Name: NF13771_high_54
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 316
Target Start/End: Original strand, 37939207 - 37939512
Alignment:
| Q |
12 |
aaagatgaatgatgggtgccaatggagaaaatatggacaaaaaatagcaaaaggaaatccatgtccacgtgcctactatcgctgtactgttgctccaggc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37939207 |
aaagatgaatgatgggtgccaatggagaaaatatggacaaaaaatagcaaaaggaaatccatgtccacgtgcctactatcgctgtactgttgctccaggc |
37939306 |
T |
|
| Q |
112 |
tgtccagttagaaaacaagtatgtatttattcattctcaactattattaattttatttgaatcttctgcggcggcagcaccatgtattggttgcaaagtc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
37939307 |
tgtccagttagaaaacaagtatgtatttattcattctcaactattattaattttatttgaatcttctacggcggcggcaccatgtattggttgcaaagtc |
37939406 |
T |
|
| Q |
212 |
gttggatcaggatgcaagatcttgcgtcctgacctaacacatatgcagtcgttacgcaaaagatctta-tttctgtattaattaaccggatcttaagaat |
310 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |
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| T |
37939407 |
gttggatcaggatgcaagatcttgcatcctgacctaacacatatgcagtcgttacgcaaaagatcttattttctttattaattaacaggatcttaagaat |
37939506 |
T |
|
| Q |
311 |
taatat |
316 |
Q |
| |
|
|||||| |
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| T |
37939507 |
taatat |
37939512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 44753258 - 44753372
Alignment:
| Q |
14 |
agatgaatgatgggtgccaatggagaaaatatggacaaaaaatagcaaaaggaaatccatgtccacgtgcctactatcgctgtactgttgctccaggctg |
113 |
Q |
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||||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| || || || || ||||||||||| || ||||| ||| || |
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| T |
44753258 |
agatgaatgatggatgccaatggaggaagtatggacaaaaaattgcaaagggaaatccttgccctcgagcttactatcgctgcacagttgcaccatcatg |
44753357 |
T |
|
| Q |
114 |
tccagttagaaaaca |
128 |
Q |
| |
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||||||||||||||| |
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| T |
44753358 |
tccagttagaaaaca |
44753372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 55365708 - 55365636
Alignment:
| Q |
14 |
agatgaatgatgggtgccaatggagaaaatatggacaaaaaatagcaaaaggaaatccatgtccacgtgccta |
86 |
Q |
| |
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|||| |||||||| ||||||||| ||||||| ||||||||||| || |||||||| || ||||| |||||||| |
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| T |
55365708 |
agatcaatgatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgccta |
55365636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 2213970 - 2214089
Alignment:
| Q |
14 |
agatgaatgatgggtgccaatggagaaaatatggacaaaaaatagcaaaaggaaatccatgtccacgtgcctactatcgctgtactgttgctccaggctg |
113 |
Q |
| |
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||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||| | || |||||||| ||||| ||||| |||| || |
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| T |
2213970 |
agatgaatgatggatgtcaatggaggaaatatggacaaaagatagcaaaaggaaatccatgtccaagagcttactatcgttgtacagttgcaccagcttg |
2214069 |
T |
|
| Q |
114 |
tccagttagaaaacaagtat |
133 |
Q |
| |
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|||||||| ||||| |||| |
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| T |
2214070 |
cccagttaggaaacaggtat |
2214089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 8497281 - 8497212
Alignment:
| Q |
21 |
tgatgggtgccaatggagaaaatatggacaaaaaatagcaaaaggaaatccatgtccacgtgcctactat |
90 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || || |||||| |
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| T |
8497281 |
tgatggatgccaatggagaaaatatggacaaaaaatggctaaaggaaatccatgtcctcgagcatactat |
8497212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 19923289 - 19923360
Alignment:
| Q |
21 |
tgatgggtgccaatggagaaaatatggacaaaaaatagcaaaaggaaatccatgtccacgtgcctactatcg |
92 |
Q |
| |
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||||||||| ||||||||||||||||||||||| | || || ||||| || |||||||| ||||||||||| |
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| T |
19923289 |
tgatgggtgtcaatggagaaaatatggacaaaagacggccaagggaaacccttgtccacgagcctactatcg |
19923360 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 14009780 - 14009711
Alignment:
| Q |
14 |
agatgaatgatgggtgccaatggagaaaatatggacaaaaaatagcaaaaggaaatccatgtccacgtgc |
83 |
Q |
| |
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|||| |||||||| ||||||||| ||||||| ||||||||||| || |||||||| || ||||| ||||| |
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| T |
14009780 |
agatcaatgatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgc |
14009711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 19614435 - 19614504
Alignment:
| Q |
14 |
agatgaatgatgggtgccaatggagaaaatatggacaaaaaatagcaaaaggaaatccatgtccacgtgc |
83 |
Q |
| |
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|||| |||||||| ||||||||| ||||||| ||||||||||| || |||||||| || ||||| ||||| |
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| T |
19614435 |
agatcaatgatggatgccaatggcgaaaatacggacaaaaaatggctaaaggaaacccttgtcctcgtgc |
19614504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 21193397 - 21193453
Alignment:
| Q |
22 |
gatgggtgccaatggagaaaatatggacaaaaaatagcaaaaggaaatccatgtcca |
78 |
Q |
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||||| || |||||||||||||||||||| || || ||||| ||||| ||||||||| |
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| T |
21193397 |
gatggatgtcaatggagaaaatatggacagaagatggcaaagggaaacccatgtcca |
21193453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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