View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13771_high_55 (Length: 328)
Name: NF13771_high_55
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_55 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 14420041 - 14420268
Alignment:
| Q |
14 |
agatgaaaggaacatatctaaattaattttggtcgttaatttggtgtggaaaataaaatgttgattctcattaggtcgacatacttctgtatgggggatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
14420041 |
agatgaaaggaacatatctaaattaattttggtcgttaatttggtgtggaaaataaaatgttgattctcattaggtcgacatacttgtgtatggggtatg |
14420140 |
T |
|
| Q |
114 |
atgtccaaagcatttttgtttgtttatgctgcctaactgagtatgctaattgttactttcggtnnnnnnnnnnnnnnnttgtttgcctaactagtatata |
213 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
14420141 |
atgtccaaagcatttgtgtttgtttatgctgcctaactgagtatgctaattgttactttcggt-----aaaaaaaaaattgtttgcctaattagtatata |
14420235 |
T |
|
| Q |
214 |
attttttatccttcaaaaacaaaagtatataat |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14420236 |
attttttatccttcaaaaacaaaagtatataat |
14420268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 14420310 - 14420353
Alignment:
| Q |
271 |
agggagaacc-gcgtctacgatttataatagacattacaaaaac |
313 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
14420310 |
agggagaacctgcgtctacgatttataatagacattacgaaaac |
14420353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University